| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H5g03508 | 5:7,583,049-7,583,942 | - | C1H5g21179 | CX5g038349 | LOC_Os05g15770 | Os05g0247100 | DIP3, XIP, OsHI-XIP | Detail |
| C2H5g09723 | 5:7,630,074-7,639,532 | - | C1H5g04227 | CX5g040966 | LOC_Os05g15890 | Os05g0247900 | OsCHR713, CHR713 | Detail |
| C2H5g16380 | 5:7,655,551-7,657,410 | - | C1H5g29560 | CX5g038055 | LOC_Os05g16000 | Os05g0249800 | - | Detail |
| C2H5g23841 | 5:7,670,803-7,671,060 | - | C1H5g10784 | CX5g038858 | LOC_Os05g16054 | Os05g0249100 | - | Detail |
| C2H5g02175 | 5:7,695,276-7,697,536 | - | C1H5g29560 | CX5g039101 | LOC_Os05g16100 | Os05g0249800 | - | Detail |
| C2H5g15350 | 5:7,707,412-7,710,911 | - | C1H5g23916 | CX5g039101 | LOC_Os05g16140 | Os05g0250000 | - | Detail |
| C2H5g06835 | 5:7,715,435-7,719,297 | - | C1H5g17383 | CX5g039101 | LOC_Os05g16240 | Os05g0250200 | - | Detail |
| C2H5g11862 | 5:7,723,279-7,726,185 | - | C1H5g19855 | CX5g041055 | LOC_Os05g16200 | Os05g0250700 | - | Detail |
| C2H5g27100 | 5:7,736,709-7,737,431 | - | - | - | - | - | - | Detail |
| C2H5g08541 | 5:7,756,996-7,758,426 | - | - | CX5g041082 | - | - | - | Detail |
| C2H5g10190 | 5:7,761,947-7,765,438 | - | C1H5g18798 | CX5g038245 | LOC_Os05g16200 | Os05g0250700 | - | Detail |
| C2H5g00039 | 5:7,788,239-7,791,656 | - | C1H5g13669 | - | - | - | - | Detail |
| C2H5g10863 | 5:7,791,689-7,792,726 | - | C1H5g13669 | CX5g039794 | LOC_Os05g16230 | Os05g0251200 | - | Detail |
| C2H5g12394 | 5:7,796,358-7,797,614 | - | C1H5g11478 | CX5g039447 | LOC_Os05g16240 | Os05g0251200 | - | Detail |
| C2H5g03213 | 5:7,799,407-7,803,760 | + | C1H5g13415 | CX5g038303 | LOC_Os05g16250 | Os05g0251400 | OsBVF1, P31<sup>comet</sup> | Detail |
| C2H5g18069 | 5:7,804,814-7,808,658 | + | C1H5g25482 | CX5g038303 | - | Os05g0251500 | - | Detail |
| C2H5g11253 | 5:7,812,460-7,816,343 | + | C1H5g22880 | CX5g037603 | - | - | - | Detail |
| C2H5g17103 | 5:7,813,545-7,819,371 | - | C1H5g03577 | CX5g040268 | LOC_Os05g16280 | Os05g0251900 | - | Detail |
| C2H5g24772 | 5:7,822,367-7,827,353 | - | C1H5g13508 | CX5g041044 | LOC_Os05g16290 | Os05g0252000 | - | Detail |
| C2H5g01822 | 5:7,838,754-7,840,413 | - | C1H5g26814 | CX5g037929 | LOC_Os05g16300 | Os05g0252100 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g000715 | 1:24,947,433-24,947,748 | - | - | - | - | - | - | Detail |
| CX1g007143 | 1:24,948,644-24,950,929 | - | C1H1g17992 | C2H1g29263 | LOC_Os01g48850 | Os01g0680900 | - | Detail |
| CX1g002388 | 1:24,952,669-24,958,372 | - | C1H1g20689 | C2H1g05013 | LOC_Os01g48874 | Os01g0681000 | - | Detail |
| CX1g005771 | 1:24,960,719-24,960,871 | - | - | - | LOC_Os01g49630 | Os01g0728000 | - | Detail |
| CX1g001461 | 1:24,963,721-24,969,138 | + | C1H1g07251 | C2H1g07127 | LOC_Os01g48900 | Os01g0681100 | - | Detail |
| CX1g007055 | 1:24,970,859-24,975,730 | - | C1H1g21340 | C2H1g13127 | LOC_Os01g48910 | Os01g0681200 | - | Detail |
| CX1g000478 | 1:24,978,990-24,984,060 | - | C1H1g18369 | C2H1g29187 | LOC_Os01g48920 | Os01g0681400 | ATG6A, OsATG6a | Detail |
| CX1g006805 | 1:24,984,401-24,987,045 | + | C1H1g01190 | C2H1g15446 | LOC_Os01g48930 | Os01g0681600 | - | Detail |
| CX1g000653 | 1:24,990,164-24,990,520 | - | - | - | LOC_Os01g48940 | Os01g0681700 | - | Detail |
| CX1g000256 | 1:24,993,108-24,993,485 | - | C1H5g11125 | C2H5g14804 | LOC_Os01g48950 | Os01g0681800 | - | Detail |
| CX1g000610 | 1:24,995,834-25,006,408 | - | C1H1g12744 | C2H1g14692 | LOC_Os01g48960 | Os01g0681900 | OsGOGAT1, NADH-GOGAT1 | Detail |
| CX1g006698 | 1:25,018,402-25,018,836 | - | - | - | - | - | - | Detail |
| CX1g000049 | 1:25,023,540-25,028,206 | - | C1H1g07001 | C2H1g11093 | LOC_Os01g48980 | Os01g0682200 | - | Detail |
| CX1g000149 | 1:25,030,764-25,041,125 | + | C1H1g18921 | C2H1g30064 | LOC_Os01g49000 | Os01g0683100 | - | Detail |
| CX1g006274 | 1:25,057,996-25,058,169 | - | - | - | - | - | - | Detail |
| CX1g004184 | 1:25,060,701-25,060,850 | - | - | - | - | - | - | Detail |
| CX1g002822 | 1:25,078,295-25,079,836 | + | C1H1g21001 | C2H1g08995 | LOC_Os01g49026 | Os01g0683600 | - | Detail |
| CX1g003922 | 1:25,081,474-25,082,347 | + | C1H1g08336 | C2H1g03855 | LOC_Os01g49030 | Os01g0683700 | - | Detail |
| CX1g004098 | 1:25,085,341-25,085,679 | + | - | - | - | - | - | Detail |
| CX1g000472 | 1:25,123,813-25,126,639 | + | C1H1g07796 | C2H1g15370 | LOC_Os01g49060 | Os01g0684800 | - | Detail |