| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g15293 | 3:20,623,898-20,630,643 | + | C2H3g21270 | CX3g027455 | LOC_Os03g39170 | Os03g0588800 | - | Detail |
| C1H3g01503 | 3:20,654,400-20,657,176 | - | C2H3g02679 | CX3g027116 | LOC_Os03g39230 | Os03g0589300 | - | Detail |
| C1H3g25070 | 3:20,658,137-20,658,567 | - | C2H3g24251 | CX3g024950 | - | - | - | Detail |
| C1H3g22951 | 3:20,681,913-20,682,198 | + | C2H3g04403 | - | LOC_Os03g39380 | Os10g0571100 | - | Detail |
| C1H3g05834 | 3:20,714,139-20,716,046 | - | C2H3g14133 | CX3g031061 | LOC_Os03g39520 | Os03g0591600 | - | Detail |
| C1H3g23494 | 3:20,738,360-20,743,305 | + | C2H3g23101 | - | LOC_Os03g38370 | Os03g0591801 | - | Detail |
| C1H3g15078 | 3:20,742,678-20,747,150 | - | C2H3g11830 | CX3g026609 | LOC_Os03g39540 | Os03g0248300 | - | Detail |
| C1H3g02377 | 3:20,758,657-20,758,917 | + | C2H3g18871 | - | - | - | - | Detail |
| C1H3g28027 | 3:20,765,129-20,766,383 | + | C2H3g27247 | CX3g026085 | LOC_Os03g39610 | Os03g0592500 | - | Detail |
| C1H3g16999 | 3:20,783,629-20,795,642 | - | C2H3g20853 | CX3g025924 | LOC_Os03g39640 | Os03g0593200 | - | Detail |
| C1H3g23440 | 3:20,825,658-20,829,429 | + | C2H3g06535 | CX3g029296 | LOC_Os03g39650 | Os03g0593600 | - | Detail |
| C1H3g27207 | 3:20,856,255-20,856,932 | - | C2H3g23101 | - | - | - | - | Detail |
| C1H3g00424 | 3:20,856,535-20,858,832 | + | C2H3g05166 | CX3g027675 | LOC_Os03g39690 | Os03g0594100 | - | Detail |
| C1H3g00255 | 3:20,860,111-20,861,380 | + | C2H3g02607 | CX3g030581 | LOC_Os03g39760 | Os03g0594900 | - | Detail |
| C1H3g23343 | 3:20,866,162-20,875,807 | - | C2H3g28417 | CX3g029540 | LOC_Os03g39710 | Os03g0594400 | OsMST2, OsSTP2 | Detail |
| C1H3g02853 | 3:20,878,037-20,883,921 | - | C2H3g03244 | CX3g025301 | LOC_Os03g39740 | Os03g0594700 | - | Detail |
| C1H3g28781 | 3:20,889,146-20,890,921 | + | C2H3g04158 | CX3g030581 | LOC_Os03g39760 | Os03g0594900 | - | Detail |
| C1H3g23129 | 3:20,894,593-20,895,953 | + | C2H3g24679 | CX3g029269 | LOC_Os03g39760 | Os03g0594900 | - | Detail |
| C1H3g03263 | 3:20,908,395-20,910,359 | + | C2H3g17648 | CX3g027467 | LOC_Os03g39820 | Os03g0595200 | - | Detail |
| C1H3g23195 | 3:20,911,302-20,912,265 | - | C2H3g26444 | CX3g025791 | LOC_Os03g39830 | Os03g0595300 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g001755 | 1:24,781,791-24,784,523 | + | - | C2H1g00029 | LOC_Os01g48610 | Os01g0677900 | - | Detail |
| CX1g000852 | 1:24,787,440-24,790,142 | + | - | C2H1g18016 | LOC_Os01g48620 | Os01g0678000 | - | Detail |
| CX1g004827 | 1:24,794,878-24,797,787 | + | - | C2H1g00029 | LOC_Os01g48640 | Os01g0678100 | - | Detail |
| CX1g006166 | 1:24,803,199-24,806,003 | + | - | C2H1g26788 | LOC_Os01g48660 | Os01g0678400 | - | Detail |
| CX1g004904 | 1:24,807,743-24,821,542 | - | C1H1g22731 | C2H1g03816 | LOC_Os01g48680 | Os01g0678500 | TPC1, OsTPC1, Tpc1, OsCC1 | Detail |
| CX1g001832 | 1:24,822,634-24,824,489 | + | C1H1g06484 | C2H1g17432 | LOC_Os01g48690 | Os01g0678600 | - | Detail |
| CX1g005378 | 1:24,825,659-24,828,641 | - | C1H1g21202 | C2H1g29587 | LOC_Os01g48700 | Os01g0678700 | - | Detail |
| CX1g000800 | 1:24,833,603-24,834,194 | + | C1H1g29809 | C2H1g22453 | - | - | - | Detail |
| CX1g006182 | 1:24,836,901-24,837,533 | - | C1H1g09148 | C2H1g18621 | LOC_Os01g48710 | Os01g0678800 | - | Detail |
| CX1g003185 | 1:24,841,650-24,842,261 | - | - | - | - | - | - | Detail |
| CX1g006519 | 1:24,845,929-24,854,376 | + | C1H1g01369 | C2H1g02873 | LOC_Os01g48720 | Os01g0679000 | - | Detail |
| CX1g006874 | 1:24,860,977-24,861,255 | + | - | - | - | - | - | Detail |
| CX1g004313 | 1:24,863,787-24,867,829 | + | C1H1g09308 | C2H1g10975 | LOC_Os01g48750 | Os01g0679550 | - | Detail |
| CX1g003619 | 1:24,869,694-24,873,055 | + | C1H1g00895 | C2H1g25010 | LOC_Os01g48760 | Os01g0679600 | - | Detail |
| CX1g000487 | 1:24,873,848-24,876,098 | - | C1H5g03876 | C2H1g04367 | LOC_Os01g48770 | Os01g0679700 | - | Detail |
| CX1g003718 | 1:24,887,472-24,893,144 | + | C1H1g15404 | C2H1g01242 | LOC_Os01g48790 | Os01g0679900 | - | Detail |
| CX1g004327 | 1:24,904,616-24,905,776 | + | C1H1g14743 | C2H1g18628 | LOC_Os01g48800 | Os01g0680200 | OsPUP4, BG3/OsPUP4, BG3 | Detail |
| CX1g006918 | 1:24,918,072-24,919,988 | + | C1H1g08166 | C2H1g09841 | LOC_Os01g48810 | Os01g0680400 | - | Detail |
| CX1g002655 | 1:24,925,762-24,926,673 | + | C1H1g07424 | C2H1g14175 | LOC_Os01g48820 | Os01g0680600 | - | Detail |
| CX1g002522 | 1:24,934,891-24,939,487 | - | C1H1g15834 | C2H1g22016 | LOC_Os01g48830 | Os01g0680700 | - | Detail |