| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g07018 | 3:4,064,168-4,067,247 | - | C1H3g25212 | CX3g030934 | LOC_Os03g09020 | Os03g0189600 | - | Detail |
| C2H3g15705 | 3:4,076,995-4,077,741 | + | C1H3g17759 | CX3g030414 | LOC_Os03g09045 | Os03g0190000 | - | Detail |
| C2H3g04200 | 3:4,079,357-4,082,330 | - | C1H3g10345 | CX3g029542 | LOC_Os03g09060 | Os03g0190100 | - | Detail |
| C2H3g20959 | 3:4,084,964-4,088,393 | - | C1H3g09287 | CX3g031332 | LOC_Os03g09070 | Os03g0190300 | - | Detail |
| C2H3g15387 | 3:4,095,573-4,099,565 | - | C1H3g05709 | CX3g031087 | LOC_Os03g09080 | Os03g0190800 | - | Detail |
| C2H3g01761 | 3:4,101,326-4,104,401 | - | C1H3g10832 | CX3g028138 | LOC_Os03g09090 | Os03g0190900 | - | Detail |
| C2H3g07809 | 3:4,106,752-4,114,670 | - | C1H3g14873 | CX3g029059 | LOC_Os03g09100 | Os03g0191000 | SCT1 | Detail |
| C2H3g15678 | 3:4,117,966-4,121,511 | - | C1H3g14873 | CX3g025401 | LOC_Os03g09110 | Os03g0191100 | - | Detail |
| C2H3g21550 | 3:4,126,940-4,128,168 | - | C1H3g14671 | CX3g026471 | LOC_Os03g09120 | Os03g0191200 | - | Detail |
| C2H3g28466 | 3:4,139,871-4,142,219 | + | C1H3g14495 | CX3g028388 | LOC_Os03g09140 | Os03g0191400 | OsRab6B2, OsRab6a | Detail |
| C2H3g00905 | 3:4,144,938-4,148,814 | - | C1H3g25069 | CX3g027338 | LOC_Os03g09150 | Os03g0191700 | - | Detail |
| C2H3g19135 | 3:4,151,128-4,151,937 | + | C1H3g30469 | CX3g029377 | LOC_Os03g09160 | Os03g0191800 | - | Detail |
| C2H3g16037 | 3:4,157,728-4,158,624 | - | C1H3g18769 | CX3g028606 | LOC_Os03g09170 | Os03g0191900 | - | Detail |
| C2H3g14345 | 3:4,163,160-4,166,595 | - | C1H3g13867 | CX3g025223 | LOC_Os03g09180 | Os03g0192000 | - | Detail |
| C2H3g00220 | 3:4,167,033-4,169,737 | + | C1H3g13109 | CX3g026535 | LOC_Os03g09190 | Os03g0192100 | - | Detail |
| C2H3g04064 | 3:4,169,895-4,172,790 | - | C1H3g24183 | CX3g029681 | LOC_Os03g09200 | Os03g0192300 | - | Detail |
| C2H3g23777 | 3:4,183,683-4,186,314 | - | C1H3g22125 | CX3g026243 | LOC_Os03g09210 | Os03g0192400 | - | Detail |
| C2H3g14962 | 3:4,191,655-4,196,800 | + | C1H3g21423 | CX3g025389 | LOC_Os03g09220 | Os03g0192500 | PP45, OsPP45, BIPP2C1 | Detail |
| C2H3g01547 | 3:4,197,442-4,198,720 | - | C1H3g29007 | CX3g029005 | LOC_Os03g09230 | Os03g0192600 | - | Detail |
| C2H3g00630 | 3:4,201,731-4,206,113 | - | C1H3g26414 | CX3g028884 | LOC_Os03g09250 | Os03g0192700 | INO1, RINO1 | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX6g044161 | 6:6,891,076-6,898,361 | + | C1H6g01800 | C2H6g26974 | LOC_Os06g14510 | Os06g0256500 | - | Detail |
| CX6g041641 | 6:6,914,340-6,915,126 | + | C1H6g09434 | C2H6g13880 | LOC_Os06g14530 | Os06g0256800 | - | Detail |
| CX6g042391 | 6:6,917,070-6,922,227 | - | C1H6g06821 | C2H6g23574 | LOC_Os06g14540 | Os06g0256900 | OsGH9B3 | Detail |
| CX6g045791 | 6:6,932,865-6,936,018 | - | C1H6g28420 | C2H6g22071 | LOC_Os06g14550 | Os06g0257200 | - | Detail |
| CX6g041399 | 6:6,941,937-6,942,956 | - | - | C2H6g03777 | LOC_Os06g14620 | Os06g0257450 | ST1, st1(ws1), ws1, st1, RNRS1, rnrs1, NSL2 | Detail |
| CX6g044724 | 6:6,945,675-6,947,222 | + | C1H6g02316 | C2H6g04113 | LOC_Os06g14630 | Os06g0257600 | - | Detail |
| CX6g043290 | 6:6,965,456-6,966,502 | + | C1H6g09969 | C2H6g00648 | LOC_Os06g14670 | Os06g0258000 | - | Detail |
| CX6g045414 | 6:6,977,018-6,977,545 | + | C1H6g21869 | C2H6g21355 | LOC_Os06g14700 | Os06g0250760 | Os2R_MYB65 | Detail |
| CX6g042386 | 6:7,015,491-7,015,994 | + | C1H6g23895 | C2H6g21355 | LOC_Os06g14010 | Os06g0250760 | Os2R_MYB65 | Detail |
| CX6g042613 | 6:7,019,900-7,020,406 | + | C1H6g23895 | C2H6g21355 | LOC_Os06g14010 | Os06g0250760 | Os2R_MYB65 | Detail |
| CX6g045764 | 6:7,022,667-7,037,143 | + | C1H6g11559 | C2H6g03619 | LOC_Os06g14740 | Os06g0258900 | - | Detail |
| CX6g044644 | 6:7,038,859-7,046,231 | - | C1H6g18024 | C2H6g01049 | LOC_Os06g14750 | Os06g0259000 | - | Detail |
| CX6g041615 | 6:7,091,968-7,092,474 | - | C1H6g12074 | C2H6g10609 | LOC_Os07g25060 | Os07g0432333 | - | Detail |
| CX6g045748 | 6:7,101,589-7,102,095 | + | C1H6g12074 | C2H6g10609 | LOC_Os07g25060 | Os07g0432333 | - | Detail |
| CX6g042529 | 6:7,103,494-7,104,150 | + | - | C2H6g05565 | - | - | - | Detail |
| CX6g041426 | 6:7,118,508-7,118,726 | + | - | - | - | Os07g0464001 | - | Detail |
| CX6g041283 | 6:7,128,503-7,129,800 | - | C1H6g28805 | C2H6g15261 | LOC_Os06g14780 | Os06g0260000 | - | Detail |
| CX6g042162 | 6:7,156,538-7,158,317 | + | - | - | - | Os06g0260250 | - | Detail |
| CX6g045707 | 6:7,156,721-7,158,202 | - | - | C2H6g21532 | LOC_Os06g14810 | Os06g0260500 | OsCUT5 | Detail |
| CX6g041851 | 6:7,160,579-7,160,815 | - | - | - | - | - | - | Detail |