| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g21569 | 3:6,970,786-6,972,487 | + | C2H3g26557 | CX3g029611 | LOC_Os03g14500 | Os03g0249100 | - | Detail |
| C1H3g23105 | 3:6,972,856-6,975,780 | + | C2H3g29515 | CX3g029820 | LOC_Os03g14510 | Os03g0249200 | - | Detail |
| C1H3g11399 | 3:6,979,679-6,982,658 | + | C2H3g01671 | CX3g027233 | LOC_Os03g14520 | Os03g0249300 | - | Detail |
| C1H3g07919 | 3:6,983,345-6,984,998 | + | C2H3g21948 | CX3g027067 | LOC_Os03g14530 | Os03g0249400 | - | Detail |
| C1H3g04860 | 3:6,987,775-6,989,229 | + | C2H3g26153 | CX3g026238 | LOC_Os03g14540 | Os03g0249500 | - | Detail |
| C1H3g27147 | 3:6,993,242-6,993,880 | + | C2H3g22650 | CX3g026981 | LOC_Os03g14550 | Os03g0760800 | GASR1, OsGASR1 | Detail |
| C1H3g11524 | 3:7,006,819-7,007,211 | - | C2H3g02802 | CX3g027321 | LOC_Os03g14570 | Os03g0249700 | - | Detail |
| C1H3g00105 | 3:7,011,187-7,013,601 | + | C2H3g12837 | CX3g026249 | LOC_Os03g14580 | Os03g0249900 | - | Detail |
| C1H3g21182 | 3:7,014,151-7,017,287 | - | C2H3g11625 | CX3g029360 | LOC_Os03g14590 | Os03g0250000 | - | Detail |
| C1H3g01522 | 3:7,019,726-7,024,773 | - | C2H3g05440 | CX3g030683 | LOC_Os03g14610 | Os03g0250200 | - | Detail |
| C1H3g02022 | 3:7,028,607-7,029,587 | - | C2H3g10452 | - | LOC_Os03g14615 | Os03g0250301 | - | Detail |
| C1H3g21317 | 3:7,037,267-7,037,656 | - | C2H3g28271 | CX3g028936 | LOC_Os03g14630 | Os03g0250400 | - | Detail |
| C1H3g06987 | 3:7,058,647-7,060,901 | - | C2H3g21148 | - | - | - | - | Detail |
| C1H3g07575 | 3:7,061,460-7,062,817 | - | C2H3g21148 | - | - | - | - | Detail |
| C1H3g24661 | 3:7,070,652-7,071,134 | - | - | - | LOC_Os03g14642 | Os03g0251000 | - | Detail |
| C1H3g21746 | 3:7,078,492-7,079,232 | - | C2H3g12224 | CX3g025713 | LOC_Os03g14669 | Os03g0251350 | OsHAP5C, OsNF-YC2 | Detail |
| C1H3g08441 | 3:7,083,335-7,092,190 | + | C2H3g01417 | CX3g029617 | LOC_Os03g14690 | Os03g0251500 | - | Detail |
| C1H3g08518 | 3:7,092,515-7,095,645 | - | C2H3g22211 | CX3g027601 | LOC_Os03g14700 | Os03g0251600 | OsC2DP29 | Detail |
| C1H3g13884 | 3:7,099,610-7,103,713 | + | C2H3g23862 | CX3g025283 | LOC_Os03g14710 | Os03g0251700 | - | Detail |
| C1H3g19434 | 3:7,104,641-7,108,221 | - | C2H3g08409 | CX3g029065 | LOC_Os03g14720 | - | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g001337 | 1:24,537,851-24,541,408 | - | C1H1g05578 | C2H1g07292 | LOC_Os01g48200 | Os01g0672500 | OsGSL2, WS1 | Detail |
| CX1g002984 | 1:24,542,846-24,543,103 | + | - | - | - | - | - | Detail |
| CX1g002153 | 1:24,557,283-24,558,185 | - | C1H1g25440 | C2H3g22127 | - | Os01g0630900 | - | Detail |
| CX1g001818 | 1:24,562,161-24,563,585 | - | C1H1g14323 | C2H1g13364 | LOC_Os11g13920 | Os01g0838100 | - | Detail |
| CX1g000126 | 1:24,571,050-24,576,577 | + | C1H1g25004 | C2H1g08595 | LOC_Os01g48210 | Os01g0672700 | - | Detail |
| CX1g006595 | 1:24,577,824-24,579,941 | - | C1H1g22345 | C2H1g25350 | LOC_Os01g48220 | Os01g0672800 | - | Detail |
| CX1g000091 | 1:24,594,822-24,595,148 | - | - | - | LOC_Os04g06290 | - | - | Detail |
| CX1g004407 | 1:24,602,355-24,603,530 | + | C1H1g31872 | - | LOC_Os01g48250 | Os01g0673300 | - | Detail |
| CX1g004722 | 1:24,606,216-24,612,497 | - | C1H1g22730 | C2H1g23016 | LOC_Os01g48270 | Os01g0673500 | - | Detail |
| CX1g000015 | 1:24,614,019-24,616,620 | - | C1H1g16906 | C2H1g16188 | LOC_Os01g48280 | Os01g0673600 | OsUbc13, Ubc13, OsUBC47, UBC47 | Detail |
| CX1g005175 | 1:24,617,164-24,617,313 | - | - | - | LOC_Os01g49630 | Os01g0728000 | - | Detail |
| CX1g005558 | 1:24,622,863-24,623,396 | + | C1H1g29519 | C2H1g27008 | LOC_Os01g48290 | Os01g0673700 | - | Detail |
| CX1g003719 | 1:24,625,491-24,628,124 | - | C1H1g26426 | C2H1g05416 | LOC_Os01g48300 | Os01g0673800 | - | Detail |
| CX1g005342 | 1:24,628,659-24,631,843 | - | C1H1g29626 | C2H1g03818 | LOC_Os01g48310 | Os01g0673900 | - | Detail |
| CX1g007216 | 1:24,632,955-24,633,158 | + | - | - | - | - | - | Detail |
| CX1g000061 | 1:24,635,139-24,635,303 | + | C1H4g06341 | - | - | - | - | Detail |
| CX1g005053 | 1:24,640,304-24,641,308 | - | - | - | LOC_Os01g48320 | Os01g0674000 | - | Detail |
| CX1g002269 | 1:24,642,732-24,649,818 | - | C1H1g16435 | C2H1g08537 | LOC_Os01g48330 | Os01g0674100 | - | Detail |
| CX1g002853 | 1:24,663,511-24,663,898 | + | C1H1g18336 | C2H1g09956 | LOC_Os01g48360 | Os01g0674400 | - | Detail |
| CX1g000620 | 1:24,665,366-24,669,708 | - | C1H1g27753 | C2H1g02713 | LOC_Os01g48370 | Os01g0674500 | - | Detail |