| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g08748 | 3:4,317,267-4,318,514 | - | C2H3g25674 | CX3g026299 | LOC_Os03g09850 | Os03g0194300 | - | Detail |
| C1H3g06307 | 3:4,318,899-4,323,842 | - | C2H3g24777 | CX3g029479 | LOC_Os03g14600 | Os03g0822100 | - | Detail |
| C1H3g08609 | 3:4,327,251-4,329,205 | + | C2H3g25314 | CX3g025342 | LOC_Os03g09860 | Os03g0194400 | - | Detail |
| C1H3g26915 | 3:4,329,951-4,332,300 | + | C2H3g01850 | CX3g029454 | LOC_Os03g09870 | Os03g0194500 | - | Detail |
| C1H3g23931 | 3:4,333,979-4,334,563 | + | C2H3g10528 | CX3g027093 | LOC_Os03g09880 | Os03g0194600 | - | Detail |
| C1H3g18007 | 3:4,335,481-4,336,334 | - | C2H3g10333 | - | - | - | - | Detail |
| C1H3g25501 | 3:4,342,515-4,344,762 | + | C2H3g02717 | CX3g027004 | LOC_Os03g09900 | Os03g0194900 | - | Detail |
| C1H3g25063 | 3:4,354,789-4,359,262 | + | C2H3g11804 | CX3g028012 | LOC_Os03g09910 | Os03g0195100 | OsALD1 | Detail |
| C1H3g19160 | 3:4,359,789-4,363,478 | - | C2H3g05380 | CX3g030407 | LOC_Os03g09920 | Os03g0195200 | - | Detail |
| C1H3g06347 | 3:4,364,408-4,368,483 | - | C2H3g24496 | CX3g025617 | LOC_Os03g09930 | Os03g0195300 | - | Detail |
| C1H3g05383 | 3:4,371,869-4,376,917 | - | C2H3g09781 | CX3g025665 | LOC_Os03g09940 | Os03g0195450 | - | Detail |
| C1H3g00202 | 3:4,374,196-4,375,756 | + | - | - | - | Os03g0195475 | - | Detail |
| C1H3g25788 | 3:4,378,862-4,380,038 | + | - | CX3g030787 | - | - | - | Detail |
| C1H3g21097 | 3:4,396,054-4,396,413 | + | C2H3g05423 | CX3g030854 | LOC_Os03g09970 | Os03g0195800 | - | Detail |
| C1H3g03606 | 3:4,396,700-4,399,771 | + | C2H3g05423 | CX3g030854 | LOC_Os03g09970 | Os03g0195800 | - | Detail |
| C1H3g03766 | 3:4,400,367-4,400,699 | - | C2H3g02477 | - | - | - | - | Detail |
| C1H3g10488 | 3:4,404,725-4,408,629 | + | C2H3g12869 | CX3g026812 | LOC_Os03g09980 | Os03g0196000 | - | Detail |
| C1H3g16837 | 3:4,411,823-4,412,239 | - | C2H3g07370 | CX3g026017 | - | Os03g0196250 | - | Detail |
| C1H3g12862 | 3:4,428,635-4,434,023 | + | C2H3g22370 | CX3g027746 | LOC_Os03g10030 | Os03g0196400 | - | Detail |
| C1H3g19849 | 3:4,438,240-4,438,680 | - | C2H3g27922 | - | - | Os03g0196450 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g001337 | 1:24,537,851-24,541,408 | - | C1H1g05578 | C2H1g07292 | LOC_Os01g48200 | Os01g0672500 | OsGSL2, WS1 | Detail |
| CX1g002984 | 1:24,542,846-24,543,103 | + | - | - | - | - | - | Detail |
| CX1g002153 | 1:24,557,283-24,558,185 | - | C1H1g25440 | C2H3g22127 | - | Os01g0630900 | - | Detail |
| CX1g001818 | 1:24,562,161-24,563,585 | - | C1H1g14323 | C2H1g13364 | LOC_Os11g13920 | Os01g0838100 | - | Detail |
| CX1g000126 | 1:24,571,050-24,576,577 | + | C1H1g25004 | C2H1g08595 | LOC_Os01g48210 | Os01g0672700 | - | Detail |
| CX1g006595 | 1:24,577,824-24,579,941 | - | C1H1g22345 | C2H1g25350 | LOC_Os01g48220 | Os01g0672800 | - | Detail |
| CX1g000091 | 1:24,594,822-24,595,148 | - | - | - | LOC_Os04g06290 | - | - | Detail |
| CX1g004407 | 1:24,602,355-24,603,530 | + | C1H1g31872 | - | LOC_Os01g48250 | Os01g0673300 | - | Detail |
| CX1g004722 | 1:24,606,216-24,612,497 | - | C1H1g22730 | C2H1g23016 | LOC_Os01g48270 | Os01g0673500 | - | Detail |
| CX1g000015 | 1:24,614,019-24,616,620 | - | C1H1g16906 | C2H1g16188 | LOC_Os01g48280 | Os01g0673600 | OsUbc13, Ubc13, OsUBC47, UBC47 | Detail |
| CX1g005175 | 1:24,617,164-24,617,313 | - | - | - | LOC_Os01g49630 | Os01g0728000 | - | Detail |
| CX1g005558 | 1:24,622,863-24,623,396 | + | C1H1g29519 | C2H1g27008 | LOC_Os01g48290 | Os01g0673700 | - | Detail |
| CX1g003719 | 1:24,625,491-24,628,124 | - | C1H1g26426 | C2H1g05416 | LOC_Os01g48300 | Os01g0673800 | - | Detail |
| CX1g005342 | 1:24,628,659-24,631,843 | - | C1H1g29626 | C2H1g03818 | LOC_Os01g48310 | Os01g0673900 | - | Detail |
| CX1g007216 | 1:24,632,955-24,633,158 | + | - | - | - | - | - | Detail |
| CX1g000061 | 1:24,635,139-24,635,303 | + | C1H4g06341 | - | - | - | - | Detail |
| CX1g005053 | 1:24,640,304-24,641,308 | - | - | - | LOC_Os01g48320 | Os01g0674000 | - | Detail |
| CX1g002269 | 1:24,642,732-24,649,818 | - | C1H1g16435 | C2H1g08537 | LOC_Os01g48330 | Os01g0674100 | - | Detail |
| CX1g002853 | 1:24,663,511-24,663,898 | + | C1H1g18336 | C2H1g09956 | LOC_Os01g48360 | Os01g0674400 | - | Detail |
| CX1g000620 | 1:24,665,366-24,669,708 | - | C1H1g27753 | C2H1g02713 | LOC_Os01g48370 | Os01g0674500 | - | Detail |