| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g00597 | 1:29,442,348-29,444,656 | - | C2H1g21701 | CX1g000978 | LOC_Os01g56890 | Os01g0776700 | - | Detail |
| C1H1g11210 | 1:29,447,652-29,456,572 | + | C2H1g20224 | CX1g004792 | LOC_Os01g56910 | Os01g0777000 | - | Detail |
| C1H1g12823 | 1:29,464,686-29,469,841 | + | C2H1g02819 | CX1g004121 | LOC_Os01g56930 | Os01g0777200 | - | Detail |
| C1H1g24617 | 1:29,471,174-29,477,913 | + | C2H1g01868 | CX1g002623 | LOC_Os01g56940 | Os01g0777300 | OsEXO1 | Detail |
| C1H1g21107 | 1:29,478,388-29,480,001 | + | C2H1g09096 | CX1g005425 | LOC_Os01g56969 | Os01g0777400 | - | Detail |
| C1H1g01416 | 1:29,480,666-29,497,143 | - | C2H1g05939 | CX1g003121 | LOC_Os01g56980 | Os01g0777700 | - | Detail |
| C1H1g17868 | 1:29,500,465-29,504,032 | - | C2H1g00497 | CX1g001773 | LOC_Os01g56990 | Os01g0777800 | - | Detail |
| C1H1g03573 | 1:29,505,552-29,511,629 | + | C2H1g03254 | CX1g000485 | LOC_Os01g57020 | Os01g0778100 | - | Detail |
| C1H1g21965 | 1:29,514,322-29,514,528 | + | C2H1g02451 | - | LOC_Os01g57030 | - | - | Detail |
| C1H1g05620 | 1:29,516,277-29,516,465 | - | - | - | - | - | - | Detail |
| C1H1g29247 | 1:29,517,851-29,518,316 | - | C2H1g01479 | CX1g004182 | LOC_Os01g57050 | Os01g0778500 | - | Detail |
| C1H1g15889 | 1:29,531,797-29,538,286 | + | C2H1g17230 | CX1g000574 | LOC_Os01g57066 | Os01g0778700 | - | Detail |
| C1H1g04670 | 1:29,539,495-29,550,967 | + | C2H1g28934 | CX1g003174 | LOC_Os01g57073 | Os01g0778800 | - | Detail |
| C1H1g30175 | 1:29,551,103-29,551,342 | - | - | CX1g003472 | - | Os01g0778900 | - | Detail |
| C1H1g03962 | 1:29,556,930-29,565,462 | + | C2H1g28562 | CX1g003351 | LOC_Os01g57073 | Os01g0779100 | - | Detail |
| C1H1g22178 | 1:29,566,855-29,567,869 | + | C2H1g28562 | CX1g003351 | LOC_Os01g57082 | Os01g0779100 | - | Detail |
| C1H1g29302 | 1:29,570,592-29,572,718 | + | C2H1g25383 | CX1g005629 | LOC_Os01g57100 | Os01g0779300 | - | Detail |
| C1H1g04257 | 1:29,573,701-29,583,882 | - | C2H1g18551 | CX1g001051 | LOC_Os01g57110 | Os01g0779400 | OsCHR706, CHR706, ALT1 | Detail |
| C1H1g31795 | 1:29,592,410-29,593,249 | - | C2H5g11517 | CX1g005392 | LOC_Os01g57150 | Os01g0779800 | - | Detail |
| C1H1g30935 | 1:29,612,400-29,622,246 | + | C2H1g09740 | CX1g001431 | LOC_Os01g57210 | Os01g0780400 | OsKTN80c | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g001337 | 1:24,537,851-24,541,408 | - | C1H1g05578 | C2H1g07292 | LOC_Os01g48200 | Os01g0672500 | OsGSL2, WS1 | Detail |
| CX1g002984 | 1:24,542,846-24,543,103 | + | - | - | - | - | - | Detail |
| CX1g002153 | 1:24,557,283-24,558,185 | - | C1H1g25440 | C2H3g22127 | - | Os01g0630900 | - | Detail |
| CX1g001818 | 1:24,562,161-24,563,585 | - | C1H1g14323 | C2H1g13364 | LOC_Os11g13920 | Os01g0838100 | - | Detail |
| CX1g000126 | 1:24,571,050-24,576,577 | + | C1H1g25004 | C2H1g08595 | LOC_Os01g48210 | Os01g0672700 | - | Detail |
| CX1g006595 | 1:24,577,824-24,579,941 | - | C1H1g22345 | C2H1g25350 | LOC_Os01g48220 | Os01g0672800 | - | Detail |
| CX1g000091 | 1:24,594,822-24,595,148 | - | - | - | LOC_Os04g06290 | - | - | Detail |
| CX1g004407 | 1:24,602,355-24,603,530 | + | C1H1g31872 | - | LOC_Os01g48250 | Os01g0673300 | - | Detail |
| CX1g004722 | 1:24,606,216-24,612,497 | - | C1H1g22730 | C2H1g23016 | LOC_Os01g48270 | Os01g0673500 | - | Detail |
| CX1g000015 | 1:24,614,019-24,616,620 | - | C1H1g16906 | C2H1g16188 | LOC_Os01g48280 | Os01g0673600 | OsUbc13, Ubc13, OsUBC47, UBC47 | Detail |
| CX1g005175 | 1:24,617,164-24,617,313 | - | - | - | LOC_Os01g49630 | Os01g0728000 | - | Detail |
| CX1g005558 | 1:24,622,863-24,623,396 | + | C1H1g29519 | C2H1g27008 | LOC_Os01g48290 | Os01g0673700 | - | Detail |
| CX1g003719 | 1:24,625,491-24,628,124 | - | C1H1g26426 | C2H1g05416 | LOC_Os01g48300 | Os01g0673800 | - | Detail |
| CX1g005342 | 1:24,628,659-24,631,843 | - | C1H1g29626 | C2H1g03818 | LOC_Os01g48310 | Os01g0673900 | - | Detail |
| CX1g007216 | 1:24,632,955-24,633,158 | + | - | - | - | - | - | Detail |
| CX1g000061 | 1:24,635,139-24,635,303 | + | C1H4g06341 | - | - | - | - | Detail |
| CX1g005053 | 1:24,640,304-24,641,308 | - | - | - | LOC_Os01g48320 | Os01g0674000 | - | Detail |
| CX1g002269 | 1:24,642,732-24,649,818 | - | C1H1g16435 | C2H1g08537 | LOC_Os01g48330 | Os01g0674100 | - | Detail |
| CX1g002853 | 1:24,663,511-24,663,898 | + | C1H1g18336 | C2H1g09956 | LOC_Os01g48360 | Os01g0674400 | - | Detail |
| CX1g000620 | 1:24,665,366-24,669,708 | - | C1H1g27753 | C2H1g02713 | LOC_Os01g48370 | Os01g0674500 | - | Detail |