| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H12g30398 | 12:464,431-466,073 | - | C1H11g05819 | CX12g017999 | LOC_Os12g01900 | Os11g0109700 | - | Detail |
| C2H12g14314 | 12:466,277-467,170 | - | C1H11g05819 | CX12g017999 | LOC_Os12g01900 | Os12g0109700 | - | Detail |
| C2H12g14425 | 12:469,972-473,953 | + | C1H12g11854 | CX12g015337 | LOC_Os12g01910 | Os12g0109800 | - | Detail |
| C2H12g26139 | 12:475,194-476,642 | - | C1H11g26109 | CX12g015162 | LOC_Os12g01916 | Os12g0109900 | - | Detail |
| C2H12g04773 | 12:476,759-479,129 | - | C1H11g26109 | CX12g015162 | LOC_Os12g01916 | Os12g0109900 | - | Detail |
| C2H12g10658 | 12:480,105-489,851 | - | C1H12g24224 | CX12g015162 | LOC_Os12g01922 | Os12g0110000 | - | Detail |
| C2H12g12112 | 12:494,610-497,730 | - | C1H12g13590 | CX12g017518 | LOC_Os12g01930 | Os12g0110100 | - | Detail |
| C2H12g17021 | 12:498,276-501,483 | - | C1H12g23491 | CX12g015078 | LOC_Os12g01940 | Os12g0110300 | - | Detail |
| C2H12g05654 | 12:501,669-504,116 | + | C1H12g03381 | CX12g016362 | LOC_Os12g01950 | Os12g0110400 | - | Detail |
| C2H12g21050 | 12:520,766-523,470 | + | C1H12g03151 | CX12g015887 | LOC_Os12g02020 | Os12g0111400 | - | Detail |
| C2H12g18672 | 12:523,798-525,367 | - | C1H11g25556 | CX12g016454 | LOC_Os12g02030 | Os12g0111500 | - | Detail |
| C2H12g15668 | 12:530,556-530,966 | - | C1H12g08905 | CX12g018566 | LOC_Os12g02040 | Os12g0111600 | - | Detail |
| C2H12g30261 | 12:533,089-534,966 | + | C1H12g25705 | CX12g016102 | LOC_Os11g02090 | Os12g0111700 | - | Detail |
| C2H12g20566 | 12:537,330-538,857 | + | C1H11g29054 | CX12g016369 | LOC_Os12g02060 | Os12g0111800 | - | Detail |
| C2H12g14717 | 12:539,787-540,555 | - | C1H12g03557 | CX12g016960 | LOC_Os12g02070 | Os12g0416500 | - | Detail |
| C2H12g11323 | 12:547,295-549,507 | + | C1H12g09789 | CX12g017779 | LOC_Os12g02080 | Os12g0112000 | - | Detail |
| C2H12g07351 | 12:550,393-552,985 | + | C1H12g21197 | CX12g016421 | LOC_Os12g02094 | Os12g0112200 | - | Detail |
| C2H12g02181 | 12:554,403-559,835 | + | C1H12g08143 | CX12g016020 | LOC_Os12g02100 | Os12g0112300 | - | Detail |
| C2H12g27918 | 12:560,294-564,540 | + | C1H12g16160 | CX12g017415 | LOC_Os12g02105 | Os12g0112401 | - | Detail |
| C2H12g12409 | 12:562,202-565,120 | - | C1H12g21687 | CX12g018065 | LOC_Os12g02120 | Os12g0112500 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX6g044633 | 6:5,620,920-5,623,937 | - | C1H6g00685 | C2H6g25379 | LOC_Os06g12330 | Os06g0228600 | - | Detail |
| CX6g044499 | 6:5,627,654-5,630,966 | - | C1H6g13390 | C2H6g08385 | LOC_Os06g12350 | Os06g0228800 | - | Detail |
| CX6g044711 | 6:5,632,613-5,634,556 | + | C1H6g22566 | C2H6g19334 | LOC_Os06g12360 | Os06g0228900 | - | Detail |
| CX6g044911 | 6:5,635,672-5,636,730 | + | C1H6g15439 | C2H6g28900 | LOC_Os06g12360 | Os06g0228950 | - | Detail |
| CX6g043477 | 6:5,637,445-5,640,204 | - | C1H6g14481 | C2H6g05024 | LOC_Os06g12370 | Os06g0229000 | - | Detail |
| CX6g043791 | 6:5,651,304-5,654,639 | + | C1H6g30867 | C2H6g02329 | LOC_Os06g12390 | Os06g0229200 | GalT | Detail |
| CX6g041469 | 6:5,660,937-5,665,483 | + | C1H6g06761 | C2H6g13941 | LOC_Os06g12400 | Os06g0229300 | - | Detail |
| CX6g045028 | 6:5,667,402-5,669,008 | + | C1H6g31791 | C2H6g19443 | LOC_Os06g12410 | Os06g0257600 | - | Detail |
| CX6g044435 | 6:5,670,609-5,675,017 | + | C1H6g30269 | C2H6g15100 | LOC_Os06g12450 | Os06g0229800 | ALK, alk, SSII-3, OsSSIIa, OsSSII-3, SSIIa, SSS2A, OsSSIIaChr6 | Detail |
| CX6g044319 | 6:5,676,877-5,677,302 | - | - | - | LOC_Os06g12455 | Os06g0230000 | - | Detail |
| CX6g043509 | 6:5,679,818-5,679,973 | - | - | - | - | Os07g0616100 | - | Detail |
| CX6g041722 | 6:5,680,287-5,685,129 | + | C1H6g02539 | C2H6g02967 | LOC_Os06g12460 | Os06g0230100 | OsCSLA3 | Detail |
| CX6g044662 | 6:5,688,658-5,688,996 | - | - | - | - | - | - | Detail |
| CX6g043899 | 6:5,693,580-5,694,389 | + | C1H6g20958 | C2H6g18393 | LOC_Os06g12500 | Os06g0231050 | CASP3, OsCASP3 | Detail |
| CX6g042564 | 6:5,695,062-5,696,615 | - | C1H6g22566 | C2H6g07579 | LOC_Os06g12510 | Os06g0231100 | - | Detail |
| CX6g042953 | 6:5,698,756-5,700,911 | + | C1H6g10940 | C2H6g25430 | LOC_Os06g12530 | Os06g0231300 | ROX3 | Detail |
| CX6g044108 | 6:5,701,242-5,703,059 | - | C1H6g22566 | C2H6g00549 | LOC_Os06g12510 | Os06g0231400 | - | Detail |
| CX6g042127 | 6:5,709,577-5,711,717 | - | C1H6g09372 | C2H6g20507 | LOC_Os06g12560 | Os06g0231600 | - | Detail |
| CX6g045497 | 6:5,715,768-5,718,733 | - | C1H6g21654 | C2H6g04942 | LOC_Os06g12580 | Os06g0232000 | - | Detail |
| CX6g042920 | 6:5,721,736-5,722,246 | + | C1H6g04188 | - | - | - | - | Detail |