| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g02661 | 4:16,013,372-16,019,034 | - | C2H4g01312 | CX4g031408 | LOC_Os04g31170 | Os04g0380800 | - | Detail |
| C1H4g01385 | 4:16,032,701-16,042,093 | - | C2H4g29753 | CX4g033271 | LOC_Os04g31190 | Os04g0381000 | - | Detail |
| C1H4g29700 | 4:16,048,099-16,053,840 | + | C2H4g17810 | CX4g035253 | LOC_Os04g31210 | Os04g0381100 | - | Detail |
| C1H4g17691 | 4:16,054,709-16,057,828 | + | C2H4g00277 | CX4g035237 | LOC_Os04g31240 | Os04g0381400 | - | Detail |
| C1H4g16213 | 4:16,060,070-16,060,468 | + | C2H4g17534 | CX4g031369 | LOC_Os04g31250 | Os04g0381500 | - | Detail |
| C1H4g09513 | 4:16,064,045-16,069,344 | + | C2H4g29102 | CX4g035133 | LOC_Os04g31270 | Os04g0381600 | - | Detail |
| C1H4g27606 | 4:16,082,106-16,084,132 | + | C2H4g16108 | CX4g034109 | LOC_Os04g31290 | Os04g0381700 | OsbHLH156 | Detail |
| C1H4g16826 | 4:16,092,463-16,094,028 | + | C2H4g25229 | CX4g032314 | LOC_Os04g31320 | Os04g0382100 | - | Detail |
| C1H4g06772 | 4:16,097,094-16,098,627 | - | - | - | - | Os04g0382250 | - | Detail |
| C1H4g24626 | 4:16,098,841-16,099,580 | - | - | - | - | - | - | Detail |
| C1H4g08250 | 4:16,102,777-16,107,833 | - | C2H4g08291 | CX4g033731 | LOC_Os04g31340 | Os04g0382300 | - | Detail |
| C1H4g23640 | 4:16,121,861-16,127,345 | + | C2H4g21907 | CX4g033213 | LOC_Os04g31390 | Os04g0382700 | - | Detail |
| C1H4g29507 | 4:16,133,426-16,136,822 | + | C2H4g11523 | CX4g031504 | LOC_Os04g31400 | Os04g0382800 | - | Detail |
| C1H4g27689 | 4:16,256,281-16,257,659 | - | C2H4g25485 | CX4g031500 | LOC_Os04g31610 | Os04g0385600 | - | Detail |
| C1H4g28157 | 4:16,321,603-16,322,148 | + | C2H4g09951 | CX4g036232 | LOC_Os04g31670 | Os04g0386300 | - | Detail |
| C1H4g01776 | 4:16,331,665-16,334,165 | + | C2H4g19704 | CX4g034133 | LOC_Os04g31690 | Os04g0386500 | - | Detail |
| C1H4g26815 | 4:16,334,895-16,339,950 | - | C2H4g09573 | CX4g031487 | LOC_Os04g31700 | Os04g0386600 | - | Detail |
| C1H4g21589 | 4:16,341,029-16,341,943 | + | C2H4g14766 | CX4g036353 | LOC_Os04g31710 | Os04g0386700 | - | Detail |
| C1H4g05500 | 4:16,344,502-16,345,259 | - | C2H4g24192 | CX4g032722 | LOC_Os04g31730 | Os04g0386900 | - | Detail |
| C1H4g13044 | 4:16,365,676-16,365,888 | + | C2H4g21209 | CX4g034462 | LOC_Os04g31804 | Os04g0387300 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX6g044633 | 6:5,620,920-5,623,937 | - | C1H6g00685 | C2H6g25379 | LOC_Os06g12330 | Os06g0228600 | - | Detail |
| CX6g044499 | 6:5,627,654-5,630,966 | - | C1H6g13390 | C2H6g08385 | LOC_Os06g12350 | Os06g0228800 | - | Detail |
| CX6g044711 | 6:5,632,613-5,634,556 | + | C1H6g22566 | C2H6g19334 | LOC_Os06g12360 | Os06g0228900 | - | Detail |
| CX6g044911 | 6:5,635,672-5,636,730 | + | C1H6g15439 | C2H6g28900 | LOC_Os06g12360 | Os06g0228950 | - | Detail |
| CX6g043477 | 6:5,637,445-5,640,204 | - | C1H6g14481 | C2H6g05024 | LOC_Os06g12370 | Os06g0229000 | - | Detail |
| CX6g043791 | 6:5,651,304-5,654,639 | + | C1H6g30867 | C2H6g02329 | LOC_Os06g12390 | Os06g0229200 | GalT | Detail |
| CX6g041469 | 6:5,660,937-5,665,483 | + | C1H6g06761 | C2H6g13941 | LOC_Os06g12400 | Os06g0229300 | - | Detail |
| CX6g045028 | 6:5,667,402-5,669,008 | + | C1H6g31791 | C2H6g19443 | LOC_Os06g12410 | Os06g0257600 | - | Detail |
| CX6g044435 | 6:5,670,609-5,675,017 | + | C1H6g30269 | C2H6g15100 | LOC_Os06g12450 | Os06g0229800 | ALK, alk, SSII-3, OsSSIIa, OsSSII-3, SSIIa, SSS2A, OsSSIIaChr6 | Detail |
| CX6g044319 | 6:5,676,877-5,677,302 | - | - | - | LOC_Os06g12455 | Os06g0230000 | - | Detail |
| CX6g043509 | 6:5,679,818-5,679,973 | - | - | - | - | Os07g0616100 | - | Detail |
| CX6g041722 | 6:5,680,287-5,685,129 | + | C1H6g02539 | C2H6g02967 | LOC_Os06g12460 | Os06g0230100 | OsCSLA3 | Detail |
| CX6g044662 | 6:5,688,658-5,688,996 | - | - | - | - | - | - | Detail |
| CX6g043899 | 6:5,693,580-5,694,389 | + | C1H6g20958 | C2H6g18393 | LOC_Os06g12500 | Os06g0231050 | CASP3, OsCASP3 | Detail |
| CX6g042564 | 6:5,695,062-5,696,615 | - | C1H6g22566 | C2H6g07579 | LOC_Os06g12510 | Os06g0231100 | - | Detail |
| CX6g042953 | 6:5,698,756-5,700,911 | + | C1H6g10940 | C2H6g25430 | LOC_Os06g12530 | Os06g0231300 | ROX3 | Detail |
| CX6g044108 | 6:5,701,242-5,703,059 | - | C1H6g22566 | C2H6g00549 | LOC_Os06g12510 | Os06g0231400 | - | Detail |
| CX6g042127 | 6:5,709,577-5,711,717 | - | C1H6g09372 | C2H6g20507 | LOC_Os06g12560 | Os06g0231600 | - | Detail |
| CX6g045497 | 6:5,715,768-5,718,733 | - | C1H6g21654 | C2H6g04942 | LOC_Os06g12580 | Os06g0232000 | - | Detail |
| CX6g042920 | 6:5,721,736-5,722,246 | + | C1H6g04188 | - | - | - | - | Detail |