| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g21044 | 3:28,407,285-28,411,963 | + | C2H3g05635 | CX3g026362 | LOC_Os03g52840 | Os03g0738400 | - | Detail |
| C1H3g07947 | 3:28,426,568-28,430,229 | + | C2H3g05845 | CX3g025013 | LOC_Os03g52860 | Os03g0738600 | LOX-L2, OsLOX-L2, LOX1.1, LOX L-2, OsLOX2 | Detail |
| C1H3g24267 | 3:28,436,712-28,439,660 | + | C2H3g02923 | CX3g030893 | LOC_Os03g52880 | Os03g0738900 | - | Detail |
| C1H3g14490 | 3:28,448,580-28,450,347 | + | C2H3g01404 | CX3g028113 | LOC_Os03g52910 | Os03g0739700 | - | Detail |
| C1H3g22532 | 3:28,479,943-28,483,987 | + | C2H3g15580 | CX3g026120 | LOC_Os03g52970 | Os03g0740600 | - | Detail |
| C1H3g30167 | 3:28,484,903-28,489,513 | + | C2H3g17064 | CX3g027471 | LOC_Os03g52980 | Os03g0740700 | - | Detail |
| C1H3g01871 | 3:28,493,632-28,496,160 | + | C2H3g00686 | CX3g027476 | LOC_Os03g53000 | Os03g0740800 | - | Detail |
| C1H3g26768 | 3:28,496,541-28,500,749 | + | C2H3g21662 | - | - | - | - | Detail |
| C1H3g08757 | 3:28,507,086-28,509,286 | + | C2H3g06591 | CX3g029988 | LOC_Os03g53020 | Os03g0741100 | OsbHLH148 | Detail |
| C1H3g07900 | 3:28,523,241-28,526,391 | + | C2H3g29971 | CX3g029674 | LOC_Os03g53050 | Os03g0741400 | - | Detail |
| C1H3g12278 | 3:28,532,123-28,533,453 | - | C2H3g23101 | - | - | Os03g0741525 | - | Detail |
| C1H3g27808 | 3:28,544,091-28,544,348 | + | C2H3g26390 | CX3g026540 | - | - | - | Detail |
| C1H3g17107 | 3:28,546,837-28,551,431 | - | C2H3g15523 | CX3g028122 | LOC_Os03g53080 | Os03g0741700 | - | Detail |
| C1H3g25937 | 3:28,551,328-28,551,737 | + | C2H3g20852 | - | - | - | - | Detail |
| C1H3g11146 | 3:28,559,552-28,560,637 | + | C2H3g21579 | CX3g030571 | LOC_Os03g53100 | Os03g0742300 | - | Detail |
| C1H3g09898 | 3:28,561,931-28,566,717 | - | C2H3g18927 | CX3g025479 | LOC_Os03g53110 | Os03g0742400 | - | Detail |
| C1H3g03745 | 3:28,574,781-28,575,712 | + | C2H3g26757 | CX3g029167 | - | - | - | Detail |
| C1H3g23529 | 3:28,576,537-28,582,153 | + | C2H3g15149 | CX3g030577 | LOC_Os03g53140 | Os03g0742800 | - | Detail |
| C1H3g12201 | 3:28,581,074-28,583,176 | - | C2H3g27219 | CX3g026971 | LOC_Os03g53150 | Os03g0742900 | - | Detail |
| C1H3g22035 | 3:28,584,836-28,585,219 | + | C2H3g13028 | - | - | - | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX6g045973 | 6:5,112,943-5,114,136 | - | C1H6g18914 | C2H6g03151 | LOC_Os06g11640 | Os06g0219800 | - | Detail |
| CX6g042118 | 6:5,116,039-5,116,989 | - | - | C2H6g17916 | LOC_Os06g11650 | Os06g0219900 | - | Detail |
| CX6g043958 | 6:5,120,069-5,121,055 | - | - | C2H6g04012 | LOC_Os06g11660 | Os06g0220000 | - | Detail |
| CX6g045636 | 6:5,132,000-5,132,965 | + | - | C2H6g12445 | LOC_Os06g11680 | Os06g0220200 | - | Detail |
| CX6g043580 | 6:5,138,267-5,139,208 | + | - | C2H6g21859 | LOC_Os06g11700 | Os06g0220300 | - | Detail |
| CX6g045266 | 6:5,146,073-5,147,724 | + | C1H6g03579 | C2H6g24300 | LOC_Os06g11720 | Os06g0220500 | - | Detail |
| CX6g044450 | 6:5,150,079-5,154,293 | - | C1H6g06003 | C2H6g07096 | LOC_Os06g11730 | Os06g0220600 | - | Detail |
| CX6g041505 | 6:5,164,928-5,166,263 | + | C1H6g12090 | C2H6g12923 | LOC_Os06g11740 | Os06g0220800 | - | Detail |
| CX6g042441 | 6:5,166,310-5,166,630 | + | C1H6g12090 | C2H6g12923 | LOC_Os06g11740 | Os06g0220800 | - | Detail |
| CX6g041931 | 6:5,174,685-5,174,966 | + | - | C2H6g07563 | LOC_Os06g11760 | Os06g0220900 | - | Detail |
| CX6g044637 | 6:5,181,062-5,182,185 | + | C1H6g18231 | C2H6g06859 | LOC_Os06g11780 | Os06g0221000 | Os2R_MYB64 | Detail |
| CX6g043968 | 6:5,184,885-5,185,445 | - | C1H6g12182 | C2H6g09044 | LOC_Os06g14070 | Os06g0125200 | OsFLZ18 | Detail |
| CX6g043620 | 6:5,186,376-5,189,951 | - | C1H6g30010 | C2H6g11727 | LOC_Os06g11790 | Os06g0221100 | - | Detail |
| CX6g041413 | 6:5,192,619-5,195,303 | + | C1H6g19489 | C2H6g09527 | LOC_Os06g11800 | Os06g0221200 | OsAnn5 | Detail |
| CX6g043192 | 6:5,195,777-5,196,292 | - | C1H2g26243 | C2H6g15099 | LOC_Os06g11812 | Os06g0221300 | - | Detail |
| CX6g043020 | 6:5,196,827-5,197,882 | - | C1H2g14717 | - | - | - | - | Detail |
| CX6g045872 | 6:5,208,385-5,210,629 | - | C1H6g08428 | C2H6g07173 | LOC_Os06g11840 | Os06g0222100 | - | Detail |
| CX6g043696 | 6:5,216,356-5,216,815 | - | - | - | - | - | - | Detail |
| CX6g044067 | 6:5,226,141-5,226,502 | - | - | - | - | Os06g0606100 | - | Detail |
| CX6g041802 | 6:5,228,853-5,229,212 | - | - | C2H6g14078 | LOC_Os06g11850 | - | - | Detail |