| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g30555 | 3:9,896,401-9,897,018 | + | C1H3g30348 | CX3g030611 | LOC_Os03g19780 | Os03g0311600 | - | Detail |
| C2H3g20097 | 3:9,924,788-9,936,112 | + | C1H3g27309 | CX3g025645 | LOC_Os03g19870 | Os03g0312600 | - | Detail |
| C2H3g03722 | 3:9,927,638-9,929,795 | - | C1H3g28649 | CX3g026953 | LOC_Os03g19840 | Os03g0312300 | - | Detail |
| C2H3g16430 | 3:9,939,947-9,942,748 | + | C1H3g17775 | CX3g029208 | LOC_Os03g19890 | Os03g0313000 | - | Detail |
| C2H3g25727 | 3:9,943,750-9,946,030 | - | C1H3g19322 | CX3g025344 | LOC_Os03g19900 | Os03g0313100 | - | Detail |
| C2H3g16070 | 3:9,962,482-9,967,523 | - | C1H3g29669 | CX3g026685 | LOC_Os03g19920 | Os03g0313300 | - | Detail |
| C2H3g06268 | 3:9,972,081-9,976,053 | + | C1H3g10646 | CX3g029276 | LOC_Os03g19930 | Os03g0313600 | - | Detail |
| C2H3g30521 | 3:9,980,242-9,980,544 | - | C1H3g19201 | CX3g031341 | LOC_Os03g19940 | Os03g0313800 | - | Detail |
| C2H3g00659 | 3:9,985,452-9,989,194 | + | C1H3g16128 | CX3g028576 | LOC_Os03g19960 | Os03g0314100 | - | Detail |
| C2H3g06742 | 3:9,989,624-9,994,926 | - | C1H3g20812 | CX3g025949 | LOC_Os03g19970 | Os03g0314200 | - | Detail |
| C2H3g04215 | 3:9,999,494-10,001,440 | + | C1H3g05706 | CX3g028739 | LOC_Os03g19980 | Os03g0314400 | - | Detail |
| C2H3g25214 | 3:10,012,256-10,015,341 | + | C1H3g20485 | CX3g029467 | LOC_Os03g19990 | Os03g0314500 | - | Detail |
| C2H3g21031 | 3:10,019,797-10,021,050 | + | C1H3g18195 | CX3g027957 | LOC_Os03g20010 | Os03g0314700 | - | Detail |
| C2H3g01699 | 3:10,024,031-10,024,813 | + | C1H3g02376 | CX3g027957 | - | - | - | Detail |
| C2H3g06553 | 3:10,032,472-10,037,012 | - | C1H3g19914 | CX3g027685 | LOC_Os03g20020 | Os03g0314800 | OsNIN1 | Detail |
| C2H3g07740 | 3:10,039,607-10,041,751 | + | C1H3g29631 | CX3g026874 | - | - | - | Detail |
| C2H3g15105 | 3:10,054,718-10,056,834 | - | C1H3g14664 | CX3g029724 | LOC_Os03g20090 | Os03g0315400 | OsMYB2 | Detail |
| C2H3g14730 | 3:10,079,852-10,084,190 | - | C1H3g20197 | CX3g031333 | LOC_Os03g20100 | Os03g0315800 | ASL4 | Detail |
| C2H3g02965 | 3:10,095,893-10,097,578 | + | C1H3g21365 | CX3g026763 | LOC_Os03g20120 | Os03g0316200 | OsGolS1 | Detail |
| C2H3g20528 | 3:10,108,363-10,111,015 | + | C1H3g25401 | CX3g027966 | LOC_Os03g20170 | Os03g0316900 | OsABCI16 | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX6g041328 | 6:2,381,793-2,381,945 | + | - | C2H6g20372 | LOC_Os05g42448 | Os11g0631825 | - | Detail |
| CX6g042432 | 6:2,413,657-2,415,314 | - | C1H6g10484 | C2H6g17841 | LOC_Os06g06520 | Os06g0160200 | - | Detail |
| CX6g044314 | 6:2,417,901-2,421,288 | - | C1H6g16222 | C2H6g20170 | LOC_Os06g06530 | Os06g0160400 | HGW | Detail |
| CX6g043478 | 6:2,425,527-2,426,552 | + | C1H6g05796 | C2H6g04144 | LOC_Os06g06540 | Os06g0181700 | OsERF2 | Detail |
| CX6g045401 | 6:2,428,296-2,430,434 | - | C1H6g16022 | C2H6g19792 | LOC_Os06g06550 | Os06g0160600 | - | Detail |
| CX6g043739 | 6:2,432,465-2,439,265 | - | C1H6g13902 | C2H6g23161 | LOC_Os06g06560 | Os06g0160700 | SSI, OsSSI, SSS 1, SSS1, SS1 | Detail |
| CX6g042247 | 6:2,442,970-2,443,371 | - | - | C2H6g04920 | LOC_Os06g06570 | Os06g0160800 | - | Detail |
| CX6g042842 | 6:2,445,931-2,446,383 | - | - | - | - | - | - | Detail |
| CX6g043772 | 6:2,450,000-2,450,548 | + | C1H6g16824 | C2H6g21185 | - | - | - | Detail |
| CX6g043909 | 6:2,489,229-2,489,749 | - | C1H6g17960 | C2H6g27506 | - | - | - | Detail |
| CX6g045922 | 6:2,493,753-2,495,672 | + | C1H6g05484 | C2H6g23738 | LOC_Os06g06720 | Os06g0162500 | - | Detail |
| CX6g045009 | 6:2,496,033-2,501,284 | - | C1H6g16792 | C2H6g27712 | - | Os06g0162550 | OsZAS2 | Detail |
| CX6g044324 | 6:2,503,262-2,507,256 | - | C1H6g15993 | C2H6g27712 | LOC_Os06g06730 | Os06g0162600 | - | Detail |
| CX6g044673 | 6:2,508,448-2,510,749 | + | C1H6g20899 | C2H6g18003 | LOC_Os06g06740 | Os06g0162700 | - | Detail |
| CX6g042913 | 6:2,511,416-2,517,561 | - | C1H6g08500 | C2H6g28937 | LOC_Os06g06750 | Os06g0162800 | OsMADS5 | Detail |
| CX6g045187 | 6:2,519,877-2,520,080 | + | - | - | - | - | - | Detail |
| CX6g042202 | 6:2,523,186-2,523,401 | - | - | C2H6g12221 | - | - | - | Detail |
| CX6g044205 | 6:2,524,335-2,528,705 | - | C1H6g00041 | C2H6g12042 | LOC_Os06g06760 | Os06g0163000 | - | Detail |
| CX6g041513 | 6:2,531,699-2,536,567 | + | C1H6g04308 | C2H6g02736 | LOC_Os06g06770 | Os06g0163200 | - | Detail |
| CX6g045832 | 6:2,540,999-2,543,981 | + | C1H6g18381 | C2H6g03282 | LOC_Os06g06780 | Os06g0163300 | - | Detail |