| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g08811 | 1:22,727,992-22,729,387 | + | C2H1g24347 | CX1g000338 | LOC_Os01g44090 | Os01g0631500 | - | Detail |
| C1H1g07009 | 1:22,749,888-22,754,361 | + | C2H1g14152 | CX1g001009 | LOC_Os01g44110 | Os01g0631700 | - | Detail |
| C1H1g05320 | 1:22,758,481-22,764,326 | + | C2H1g16370 | CX1g000935 | LOC_Os01g44130 | Os01g0631900 | - | Detail |
| C1H1g12869 | 1:22,778,149-22,779,192 | + | C2H1g06740 | - | - | - | - | Detail |
| C1H1g13707 | 1:22,789,394-22,789,909 | - | C2H1g03548 | - | LOC_Os01g44210 | Os01g0633000 | - | Detail |
| C1H1g09519 | 1:22,799,911-22,808,100 | + | C2H1g23506 | CX1g000578 | LOC_Os01g44220 | Os01g0633100 | AGPL2, OsAGPL2, osagpl2, APL2, OsAPL2, AGPiso, sh2, Sh2 | Detail |
| C1H1g25629 | 1:22,809,738-22,813,559 | + | C2H1g25610 | CX1g004196 | LOC_Os01g44230 | Os01g0633200 | - | Detail |
| C1H1g17417 | 1:22,815,019-22,817,459 | + | C2H1g21259 | CX1g001984 | LOC_Os01g44250 | Os01g0633400 | - | Detail |
| C1H1g26792 | 1:22,822,413-22,824,342 | + | C2H1g13154 | CX1g005798 | LOC_Os01g44260 | Os01g0633500 | Rd, DFR | Detail |
| C1H1g26567 | 1:22,827,646-22,835,145 | - | C2H1g30459 | CX1g002472 | LOC_Os01g44310 | Os01g0634300 | - | Detail |
| C1H1g01839 | 1:22,861,358-22,863,345 | - | C2H1g20909 | CX1g002072 | LOC_Os01g44330 | Os01g0634500 | - | Detail |
| C1H1g04340 | 1:22,864,879-22,866,443 | - | C2H1g10174 | CX1g000429 | LOC_Os01g44340 | Os01g0634600 | - | Detail |
| C1H1g02990 | 1:22,868,213-22,870,234 | + | C2H1g02801 | CX1g003750 | LOC_Os01g44360 | Os01g0634900 | - | Detail |
| C1H1g03527 | 1:22,887,199-22,890,609 | + | C2H1g14029 | CX1g001073 | LOC_Os01g44394 | Os01g0635400 | - | Detail |
| C1H1g07657 | 1:22,892,905-22,894,371 | + | C2H1g03825 | CX8g052292 | LOC_Os01g44394 | Os01g0635400 | - | Detail |
| C1H1g22176 | 1:22,898,659-22,904,337 | - | C2H1g05065 | CX1g000646 | LOC_Os01g44430 | Os01g0635600 | - | Detail |
| C1H1g27414 | 1:22,918,386-22,920,878 | - | C2H1g18946 | CX1g003935 | LOC_Os01g44960 | Os01g0636400 | - | Detail |
| C1H1g00331 | 1:22,930,406-22,934,280 | + | C2H1g07403 | CX1g001605 | LOC_Os01g44970 | Os01g0636500 | - | Detail |
| C1H1g13180 | 1:22,936,336-22,939,660 | - | C2H1g22263 | CX1g007252 | LOC_Os01g44980 | Os01g0637600 | OsPDF1B | Detail |
| C1H1g21245 | 1:22,943,227-22,944,039 | + | C2H1g15078 | CX1g000311 | LOC_Os01g45090 | Os01g0637800 | OsMYB305 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX6g041328 | 6:2,381,793-2,381,945 | + | - | C2H6g20372 | LOC_Os05g42448 | Os11g0631825 | - | Detail |
| CX6g042432 | 6:2,413,657-2,415,314 | - | C1H6g10484 | C2H6g17841 | LOC_Os06g06520 | Os06g0160200 | - | Detail |
| CX6g044314 | 6:2,417,901-2,421,288 | - | C1H6g16222 | C2H6g20170 | LOC_Os06g06530 | Os06g0160400 | HGW | Detail |
| CX6g043478 | 6:2,425,527-2,426,552 | + | C1H6g05796 | C2H6g04144 | LOC_Os06g06540 | Os06g0181700 | OsERF2 | Detail |
| CX6g045401 | 6:2,428,296-2,430,434 | - | C1H6g16022 | C2H6g19792 | LOC_Os06g06550 | Os06g0160600 | - | Detail |
| CX6g043739 | 6:2,432,465-2,439,265 | - | C1H6g13902 | C2H6g23161 | LOC_Os06g06560 | Os06g0160700 | SSI, OsSSI, SSS 1, SSS1, SS1 | Detail |
| CX6g042247 | 6:2,442,970-2,443,371 | - | - | C2H6g04920 | LOC_Os06g06570 | Os06g0160800 | - | Detail |
| CX6g042842 | 6:2,445,931-2,446,383 | - | - | - | - | - | - | Detail |
| CX6g043772 | 6:2,450,000-2,450,548 | + | C1H6g16824 | C2H6g21185 | - | - | - | Detail |
| CX6g043909 | 6:2,489,229-2,489,749 | - | C1H6g17960 | C2H6g27506 | - | - | - | Detail |
| CX6g045922 | 6:2,493,753-2,495,672 | + | C1H6g05484 | C2H6g23738 | LOC_Os06g06720 | Os06g0162500 | - | Detail |
| CX6g045009 | 6:2,496,033-2,501,284 | - | C1H6g16792 | C2H6g27712 | - | Os06g0162550 | OsZAS2 | Detail |
| CX6g044324 | 6:2,503,262-2,507,256 | - | C1H6g15993 | C2H6g27712 | LOC_Os06g06730 | Os06g0162600 | - | Detail |
| CX6g044673 | 6:2,508,448-2,510,749 | + | C1H6g20899 | C2H6g18003 | LOC_Os06g06740 | Os06g0162700 | - | Detail |
| CX6g042913 | 6:2,511,416-2,517,561 | - | C1H6g08500 | C2H6g28937 | LOC_Os06g06750 | Os06g0162800 | OsMADS5 | Detail |
| CX6g045187 | 6:2,519,877-2,520,080 | + | - | - | - | - | - | Detail |
| CX6g042202 | 6:2,523,186-2,523,401 | - | - | C2H6g12221 | - | - | - | Detail |
| CX6g044205 | 6:2,524,335-2,528,705 | - | C1H6g00041 | C2H6g12042 | LOC_Os06g06760 | Os06g0163000 | - | Detail |
| CX6g041513 | 6:2,531,699-2,536,567 | + | C1H6g04308 | C2H6g02736 | LOC_Os06g06770 | Os06g0163200 | - | Detail |
| CX6g045832 | 6:2,540,999-2,543,981 | + | C1H6g18381 | C2H6g03282 | LOC_Os06g06780 | Os06g0163300 | - | Detail |