| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g07073 | 3:27,325,420-27,328,249 | - | C2H3g02088 | CX3g028369 | LOC_Os03g51010 | Os03g0719400 | - | Detail |
| C1H3g18727 | 3:27,333,598-27,340,771 | - | C2H3g19826 | CX3g030509 | LOC_Os03g51020 | Os03g0719500 | - | Detail |
| C1H3g17828 | 3:27,343,601-27,351,321 | - | C2H3g21521 | CX3g025792 | LOC_Os03g51030 | Os03g0719800 | PHYA, phyA, PHYA* (phyA), PHYA*, Phya, PHY18, phy 18, OsPHYA | Detail |
| C1H3g02668 | 3:27,355,410-27,357,660 | - | C2H3g23219 | CX3g027542 | LOC_Os03g51040 | Os03g0719850 | - | Detail |
| C1H3g04945 | 3:27,359,144-27,362,873 | - | C2H3g09005 | CX3g029279 | LOC_Os03g51050 | Os03g0719900 | - | Detail |
| C1H3g17570 | 3:27,375,407-27,383,857 | + | C2H3g13711 | CX3g026462 | LOC_Os03g51080 | Os03g0720300 | - | Detail |
| C1H3g14449 | 3:27,387,267-27,388,529 | + | C2H3g28128 | CX3g027259 | LOC_Os03g51090 | Os03g0720400 | - | Detail |
| C1H3g00523 | 3:27,390,529-27,391,045 | + | C2H3g18749 | CX11g011204 | LOC_Os11g37260 | - | - | Detail |
| C1H3g18844 | 3:27,405,048-27,407,087 | + | C2H3g28128 | CX3g027259 | LOC_Os03g51090 | Os03g0720400 | - | Detail |
| C1H3g11639 | 3:27,407,361-27,409,515 | + | C2H3g30385 | - | - | - | - | Detail |
| C1H3g16507 | 3:27,419,162-27,420,717 | + | C2H3g13711 | CX3g026462 | LOC_Os03g51080 | Os03g0720300 | - | Detail |
| C1H3g27041 | 3:27,437,250-27,438,670 | + | C2H3g08962 | CX3g028983 | LOC_Os03g51110 | Os03g0720800 | Os2R_MYB41 | Detail |
| C1H3g28337 | 3:27,449,102-27,471,954 | + | C2H3g28611 | CX3g027802 | LOC_Os03g51140 | Os03g0721200 | - | Detail |
| C1H3g18786 | 3:27,472,007-27,474,325 | - | C2H3g23618 | CX3g029589 | LOC_Os03g51150 | Os03g0721300 | - | Detail |
| C1H3g12607 | 3:27,475,365-27,478,326 | - | C2H3g12002 | CX3g029088 | LOC_Os03g51160 | Os03g0721400 | - | Detail |
| C1H3g28641 | 3:27,482,631-27,485,384 | - | C2H3g26307 | CX3g025020 | LOC_Os03g51180 | - | - | Detail |
| C1H3g29102 | 3:27,493,327-27,493,841 | + | C2H3g16842 | CX3g026654 | LOC_Os03g51200 | Os03g0279200 | - | Detail |
| C1H3g04974 | 3:27,497,998-27,503,722 | + | C2H3g24429 | CX3g029940 | LOC_Os03g51220 | Os03g0722100 | - | Detail |
| C1H3g07846 | 3:27,506,022-27,512,236 | + | C2H3g01976 | CX3g030800 | LOC_Os03g51230 | Os03g0722400 | OsDDM1b | Detail |
| C1H3g19413 | 3:27,513,846-27,516,277 | + | C2H3g17168 | CX3g030963 | LOC_Os03g51240 | Os03g0722500 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX6g045092 | 6:1,957,724-1,965,213 | + | C1H6g18341 | C2H6g13034 | LOC_Os06g05700 | Os06g0149900 | - | Detail |
| CX6g044360 | 6:1,966,467-1,967,317 | + | C1H6g11814 | C2H6g29709 | LOC_Os06g05710 | - | - | Detail |
| CX6g043171 | 6:1,968,006-1,969,810 | - | C1H6g14393 | C2H6g19328 | LOC_Os06g05720 | Os06g0150100 | - | Detail |
| CX6g042355 | 6:1,971,805-1,972,464 | - | C1H6g17463 | C2H6g08164 | LOC_Os06g05730 | Os06g0150300 | - | Detail |
| CX6g044541 | 6:1,973,039-1,975,888 | - | C1H6g18023 | C2H6g16160 | LOC_Os06g05740 | Os06g0150400 | - | Detail |
| CX6g043032 | 6:1,990,799-1,992,223 | + | C1H6g23710 | C2H6g05338 | LOC_Os06g05750 | Os06g0150600 | - | Detail |
| CX6g043565 | 6:2,005,126-2,006,565 | - | C1H6g23710 | C2H6g29824 | LOC_Os06g05790 | Os06g0151100 | - | Detail |
| CX6g045967 | 6:2,008,105-2,012,949 | - | C1H6g22710 | C2H6g16718 | LOC_Os06g05800 | Os06g0151200 | - | Detail |
| CX6g041509 | 6:2,014,367-2,016,062 | - | C1H6g02973 | C2H6g27113 | LOC_Os06g05804 | Os06g0151300 | - | Detail |
| CX6g042448 | 6:2,020,846-2,029,808 | + | C1H6g28419 | C2H6g10974 | LOC_Os06g05820 | Os06g0151600 | - | Detail |
| CX6g043951 | 6:2,030,373-2,032,053 | - | C1H6g02389 | C2H6g09914 | LOC_Os06g05830 | Os06g0151700 | - | Detail |
| CX6g043099 | 6:2,035,330-2,039,828 | - | C1H6g00747 | C2H6g30413 | LOC_Os06g05860 | Os06g0151900 | - | Detail |
| CX6g042479 | 6:2,054,692-2,057,657 | + | C1H6g16878 | C2H6g05144 | LOC_Os06g05870 | Os06g0152000 | - | Detail |
| CX6g042720 | 6:2,059,696-2,062,242 | + | C1H6g18767 | C2H6g29004 | LOC_Os06g05880 | Os06g0152100 | - | Detail |
| CX6g042914 | 6:2,065,017-2,068,485 | + | C1H6g25095 | C2H6g00035 | LOC_Os06g05890 | Os06g0152200 | - | Detail |
| CX6g043066 | 6:2,069,218-2,074,018 | + | C1H6g31192 | C2H6g01191 | LOC_Os06g05900 | Os06g0152300 | - | Detail |
| CX6g043733 | 6:2,074,663-2,074,938 | - | - | - | - | - | - | Detail |
| CX6g045166 | 6:2,075,405-2,078,811 | + | C1H6g25518 | C2H6g24368 | LOC_Os06g05910 | Os06g0152400 | - | Detail |
| CX6g042045 | 6:2,079,503-2,081,590 | + | C1H6g07126 | C2H6g06929 | LOC_Os06g05920 | Os06g0152500 | - | Detail |
| CX6g043011 | 6:2,084,098-2,085,722 | + | C1H6g21373 | C2H6g02217 | - | Os06g0152550 | - | Detail |