| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H4g15731 | 4:19,800,017-19,800,238 | + | C1H4g20972 | CX4g033651 | LOC_Os04g38690 | Os04g0460400 | CASP5, OsCASP5 | Detail |
| C2H4g19243 | 4:19,800,307-19,800,779 | + | C1H4g20972 | CX4g033651 | LOC_Os04g38690 | Os04g0460400 | CASP5, OsCASP5 | Detail |
| C2H4g29420 | 4:19,803,619-19,805,089 | + | C1H4g26714 | CX4g035215 | LOC_Os04g38700 | Os04g0460500 | - | Detail |
| C2H4g09182 | 4:19,829,631-19,831,251 | + | C1H4g00856 | CX4g035794 | LOC_Os04g38720 | Os04g0460600 | NAC2, OsNAC2, ONAC004, ONAC4, ONAC034, ONAC34, ONAC058, ONAC58, OMTN2, Ostil1, OsNAC2/ONAC004, OsORE1.2 | Detail |
| C2H4g21139 | 4:19,837,532-19,840,434 | - | C1H4g10275 | CX4g031747 | LOC_Os04g38730 | - | - | Detail |
| C2H4g04335 | 4:19,858,744-19,860,847 | + | C1H4g16192 | CX4g033056 | LOC_Os04g38740 | Os04g0461000 | Os2R_MYB43 | Detail |
| C2H4g17531 | 4:19,862,553-19,864,169 | + | C1H4g01178 | CX4g035604 | LOC_Os04g38750 | Os04g0461100 | - | Detail |
| C2H4g02198 | 4:19,876,032-19,877,088 | + | C1H4g10260 | CX4g034462 | LOC_Os04g38770 | Os04g0461300 | - | Detail |
| C2H4g30121 | 4:19,883,069-19,894,288 | - | C1H4g16630 | - | - | - | - | Detail |
| C2H4g25911 | 4:19,885,112-19,885,726 | + | C1H4g10260 | CX4g035338 | LOC_Os04g38780 | Os04g0304400 | OsMADS25 | Detail |
| C2H4g15152 | 4:19,898,581-19,899,725 | - | C1H4g09833 | CX4g032154 | - | Os04g0461600 | - | Detail |
| C2H4g01881 | 4:19,905,241-19,905,459 | + | - | - | - | - | - | Detail |
| C2H4g04073 | 4:19,907,187-19,910,407 | - | C1H4g11139 | CX4g033096 | LOC_Os04g38810 | Os04g0461800 | - | Detail |
| C2H4g14143 | 4:19,912,471-19,919,721 | - | C1H4g20046 | CX4g035671 | LOC_Os04g38850 | Os04g0462300 | - | Detail |
| C2H4g25655 | 4:19,917,111-19,917,873 | + | C1H4g28167 | CX4g034495 | LOC_Os04g38840 | Os04g0462200 | - | Detail |
| C2H4g21045 | 4:19,920,735-19,922,769 | - | C1H4g07343 | CX4g031760 | LOC_Os04g38860 | Os04g0462400 | OsLHT4 | Detail |
| C2H4g15046 | 4:19,927,001-19,930,499 | + | C1H4g23173 | CX4g031560 | LOC_Os04g38870 | Os04g0462500 | - | Detail |
| C2H4g09025 | 4:19,931,200-19,933,250 | - | C1H4g05269 | CX4g033001 | LOC_Os04g38880 | Os04g0462600 | - | Detail |
| C2H4g27908 | 4:19,939,601-19,940,455 | - | C1H4g30627 | CX4g034025 | LOC_Os04g38900 | Os04g0462900 | - | Detail |
| C2H4g10984 | 4:19,942,582-19,945,149 | - | C1H4g28569 | CX4g032418 | LOC_Os04g38910 | Os04g0463000 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g003408 | 1:1,872,307-1,873,809 | + | C1H1g20192 | C2H1g13473 | LOC_Os01g04880 | Os01g0141900 | - | Detail |
| CX1g004217 | 1:1,874,758-1,879,112 | - | C1H1g08627 | C2H1g10525 | LOC_Os01g04900 | Os01g0142100 | - | Detail |
| CX1g004602 | 1:1,879,352-1,881,194 | + | C1H1g24636 | C2H1g29642 | LOC_Os01g04910 | Os01g0142200 | - | Detail |
| CX1g005334 | 1:1,883,564-1,886,817 | + | C1H1g21356 | C2H1g02460 | LOC_Os01g04920 | Os01g0142300 | SQD2.2, OsSQD2.2 | Detail |
| CX1g001148 | 1:1,890,781-1,892,178 | - | C1H1g15125 | C2H1g07926 | LOC_Os01g04930 | Os01g0142500 | Os2R_MYB2 | Detail |
| CX1g001236 | 1:1,902,870-1,903,162 | + | - | - | - | Os01g0142600 | - | Detail |
| CX1g007203 | 1:1,905,253-1,907,172 | + | C1H1g12761 | C2H1g24212 | LOC_Os01g04950 | Os01g0142800 | - | Detail |
| CX1g003203 | 1:1,920,913-1,921,086 | - | - | - | - | Os02g0188201 | - | Detail |
| CX1g004805 | 1:1,926,366-1,926,638 | - | - | - | - | Os09g0276600 | - | Detail |
| CX1g001789 | 1:1,949,150-1,952,169 | - | C1H1g03229 | C2H1g05668 | LOC_Os01g04990 | Os01g0143100 | - | Detail |
| CX1g006394 | 1:1,955,037-1,955,932 | + | C1H1g29677 | C2H1g12663 | LOC_Os01g05000 | - | - | Detail |
| CX1g006849 | 1:1,960,391-1,962,853 | - | C1H1g24343 | C2H1g15469 | LOC_Os01g05020 | Os01g0143400 | - | Detail |
| CX1g004152 | 1:1,976,174-1,976,395 | - | - | C2H1g22860 | LOC_Os01g05064 | Os01g0143900 | - | Detail |
| CX1g005129 | 1:1,977,814-1,983,647 | - | C1H1g10063 | C2H1g23660 | LOC_Os01g05070 | Os01g0144000 | - | Detail |
| CX1g001193 | 1:1,985,293-1,986,459 | + | C1H1g07723 | C2H3g05697 | LOC_Os01g05090 | Os01g0144200 | - | Detail |
| CX1g000107 | 1:1,987,112-1,988,574 | - | C1H1g29569 | C2H1g12529 | LOC_Os01g05100 | Os01g0144300 | - | Detail |
| CX1g000964 | 1:1,989,784-1,995,434 | - | C1H1g20324 | C2H1g15155 | - | Os01g0144340 | - | Detail |
| CX1g006895 | 1:1,999,259-2,001,196 | - | C1H1g21842 | C2H1g26621 | LOC_Os01g05120 | Os01g0144500 | - | Detail |
| CX1g006746 | 1:2,001,899-2,004,305 | + | C1H1g24926 | C2H1g18449 | LOC_Os01g05130 | Os01g0144600 | - | Detail |
| CX1g003652 | 1:2,004,930-2,006,178 | + | C1H1g24429 | C2H1g12155 | LOC_Os01g05140 | Os01g0144700 | - | Detail |