| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H2g13421 | 2:30,379,410-30,380,372 | - | - | CX2g024909 | LOC_Os02g54450 | Os02g0785700 | - | Detail |
| C2H2g10345 | 2:30,381,783-30,382,312 | + | - | - | LOC_Os05g25680 | Os05g0321600 | - | Detail |
| C2H2g09400 | 2:30,384,038-30,384,562 | + | C1H2g22630 | CX2g022096 | LOC_Os02g54470 | Os02g0785800 | - | Detail |
| C2H2g24301 | 2:30,386,825-30,395,048 | + | C1H2g16607 | CX2g021693 | LOC_Os02g54490 | Os02g0785900 | - | Detail |
| C2H2g16599 | 2:30,396,428-30,404,789 | + | C1H2g04640 | CX2g024703 | LOC_Os02g54500 | Os02g0786000 | - | Detail |
| C2H2g21668 | 2:30,410,106-30,416,388 | + | C1H2g14270 | CX2g019009 | LOC_Os02g54510 | Os02g0786200 | - | Detail |
| C2H2g02803 | 2:30,424,686-30,428,199 | + | C1H2g29436 | CX2g024716 | LOC_Os02g54520 | Os02g0786400 | OsMYB36b | Detail |
| C2H2g17562 | 2:30,429,198-30,429,737 | + | C1H2g24406 | CX2g020901 | LOC_Os02g54530 | Os02g0786500 | - | Detail |
| C2H2g10089 | 2:30,433,843-30,434,364 | + | C1H2g01457 | CX2g020901 | LOC_Os02g54540 | Os02g0786500 | - | Detail |
| C2H2g17982 | 2:30,440,204-30,440,821 | + | C1H2g01457 | CX2g020771 | LOC_Os02g54560 | Os02g0786900 | - | Detail |
| C2H2g09660 | 2:30,441,711-30,442,247 | - | C1H2g13395 | CX2g023717 | LOC_Os02g54570 | Os02g0787000 | - | Detail |
| C2H2g14363 | 2:30,443,501-30,446,969 | + | C1H2g05721 | CX2g022090 | LOC_Os02g54580 | Os02g0787100 | - | Detail |
| C2H2g24176 | 2:30,447,856-30,448,053 | + | C1H2g17039 | CX2g022088 | LOC_Os02g54590 | Os02g0787200 | - | Detail |
| C2H2g27576 | 2:30,448,155-30,450,195 | + | C1H2g17039 | CX2g022088 | LOC_Os02g54590 | Os02g0787200 | - | Detail |
| C2H2g16691 | 2:30,450,311-30,451,725 | + | C1H2g17039 | CX2g022088 | LOC_Os02g54590 | Os02g0787200 | - | Detail |
| C2H2g16242 | 2:30,455,425-30,456,528 | - | C1H2g05581 | CX2g019876 | LOC_Os02g54600 | Os02g0787300 | SMG1, OsMKK4, MKK4, OsMKK4/SMG1 | Detail |
| C2H2g29050 | 2:30,480,799-30,485,502 | + | C1H2g05584 | CX2g023310 | LOC_Os02g54624 | Os02g0787500 | - | Detail |
| C2H2g29172 | 2:30,490,033-30,490,416 | + | C1H2g08821 | CX2g020275 | - | - | - | Detail |
| C2H2g09069 | 2:30,495,779-30,501,939 | + | C1H2g10849 | CX2g019134 | LOC_Os02g54640 | Os02g0787600 | - | Detail |
| C2H2g02130 | 2:30,503,464-30,510,511 | - | C1H2g10467 | CX2g020090 | LOC_Os02g54650 | Os02g0787800 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g003408 | 1:1,872,307-1,873,809 | + | C1H1g20192 | C2H1g13473 | LOC_Os01g04880 | Os01g0141900 | - | Detail |
| CX1g004217 | 1:1,874,758-1,879,112 | - | C1H1g08627 | C2H1g10525 | LOC_Os01g04900 | Os01g0142100 | - | Detail |
| CX1g004602 | 1:1,879,352-1,881,194 | + | C1H1g24636 | C2H1g29642 | LOC_Os01g04910 | Os01g0142200 | - | Detail |
| CX1g005334 | 1:1,883,564-1,886,817 | + | C1H1g21356 | C2H1g02460 | LOC_Os01g04920 | Os01g0142300 | SQD2.2, OsSQD2.2 | Detail |
| CX1g001148 | 1:1,890,781-1,892,178 | - | C1H1g15125 | C2H1g07926 | LOC_Os01g04930 | Os01g0142500 | Os2R_MYB2 | Detail |
| CX1g001236 | 1:1,902,870-1,903,162 | + | - | - | - | Os01g0142600 | - | Detail |
| CX1g007203 | 1:1,905,253-1,907,172 | + | C1H1g12761 | C2H1g24212 | LOC_Os01g04950 | Os01g0142800 | - | Detail |
| CX1g003203 | 1:1,920,913-1,921,086 | - | - | - | - | Os02g0188201 | - | Detail |
| CX1g004805 | 1:1,926,366-1,926,638 | - | - | - | - | Os09g0276600 | - | Detail |
| CX1g001789 | 1:1,949,150-1,952,169 | - | C1H1g03229 | C2H1g05668 | LOC_Os01g04990 | Os01g0143100 | - | Detail |
| CX1g006394 | 1:1,955,037-1,955,932 | + | C1H1g29677 | C2H1g12663 | LOC_Os01g05000 | - | - | Detail |
| CX1g006849 | 1:1,960,391-1,962,853 | - | C1H1g24343 | C2H1g15469 | LOC_Os01g05020 | Os01g0143400 | - | Detail |
| CX1g004152 | 1:1,976,174-1,976,395 | - | - | C2H1g22860 | LOC_Os01g05064 | Os01g0143900 | - | Detail |
| CX1g005129 | 1:1,977,814-1,983,647 | - | C1H1g10063 | C2H1g23660 | LOC_Os01g05070 | Os01g0144000 | - | Detail |
| CX1g001193 | 1:1,985,293-1,986,459 | + | C1H1g07723 | C2H3g05697 | LOC_Os01g05090 | Os01g0144200 | - | Detail |
| CX1g000107 | 1:1,987,112-1,988,574 | - | C1H1g29569 | C2H1g12529 | LOC_Os01g05100 | Os01g0144300 | - | Detail |
| CX1g000964 | 1:1,989,784-1,995,434 | - | C1H1g20324 | C2H1g15155 | - | Os01g0144340 | - | Detail |
| CX1g006895 | 1:1,999,259-2,001,196 | - | C1H1g21842 | C2H1g26621 | LOC_Os01g05120 | Os01g0144500 | - | Detail |
| CX1g006746 | 1:2,001,899-2,004,305 | + | C1H1g24926 | C2H1g18449 | LOC_Os01g05130 | Os01g0144600 | - | Detail |
| CX1g003652 | 1:2,004,930-2,006,178 | + | C1H1g24429 | C2H1g12155 | LOC_Os01g05140 | Os01g0144700 | - | Detail |