| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H5g17694 | 5:1,387,037-1,392,794 | - | C2H5g16712 | CX5g039622 | LOC_Os05g03640 | Os05g0127500 | - | Detail |
| C1H5g12303 | 5:1,415,004-1,416,476 | + | C2H5g05001 | CX5g040566 | LOC_Os05g03750 | Os05g0128100 | - | Detail |
| C1H5g14002 | 5:1,429,621-1,431,545 | - | C2H5g10735 | CX5g039214 | LOC_Os05g03770 | Os05g0128300 | - | Detail |
| C1H5g27203 | 5:1,437,526-1,440,847 | - | C2H5g15512 | CX5g038112 | LOC_Os05g03780 | Os05g0128400 | OsMTP1 | Detail |
| C1H5g26071 | 5:1,450,527-1,454,746 | + | C2H5g12644 | CX5g037779 | LOC_Os05g03820 | Os05g0129000 | - | Detail |
| C1H5g17726 | 5:1,457,853-1,459,708 | + | C2H5g20670 | CX5g036800 | LOC_Os05g03830 | Os05g0129100 | - | Detail |
| C1H5g20738 | 5:1,460,007-1,462,175 | - | C2H5g08741 | CX5g040768 | LOC_Os05g03840 | Os05g0129200 | - | Detail |
| C1H5g14331 | 5:1,494,591-1,500,309 | - | C2H5g24745 | CX5g038179 | LOC_Os05g03884 | Os05g0129700 | Oskn2, OSH71, Oskn2/OSH71 | Detail |
| C1H5g16799 | 5:1,506,515-1,508,333 | - | C2H5g23667 | - | - | - | - | Detail |
| C1H5g11198 | 5:1,513,727-1,514,565 | + | C2H5g10940 | CX5g037909 | LOC_Os05g03900 | Os05g0129800 | - | Detail |
| C1H5g15292 | 5:1,515,259-1,519,290 | - | C2H5g13765 | CX5g038918 | LOC_Os05g03910 | Os05g0129900 | - | Detail |
| C1H5g09306 | 5:1,522,797-1,526,818 | + | C2H5g20349 | CX5g036768 | LOC_Os05g03920 | Os05g0130100 | - | Detail |
| C1H5g02682 | 5:1,541,276-1,542,253 | - | C2H5g13879 | - | - | - | - | Detail |
| C1H5g31896 | 5:1,558,184-1,566,344 | - | C2H5g28718 | CX5g040404 | LOC_Os05g03972 | Os05g0130400 | - | Detail |
| C1H5g15210 | 5:1,573,177-1,573,586 | - | C2H5g08536 | - | - | Os05g0130500 | - | Detail |
| C1H5g13927 | 5:1,578,202-1,582,694 | - | C2H5g17204 | CX5g040242 | LOC_Os05g04020 | Os05g0130400 | - | Detail |
| C1H5g19982 | 5:1,584,559-1,585,021 | + | C2H5g23034 | CX5g038388 | - | - | - | Detail |
| C1H5g21167 | 5:1,586,510-1,587,802 | + | C2H5g10179 | - | - | - | - | Detail |
| C1H5g11003 | 5:1,594,377-1,596,806 | - | C2H5g12456 | - | LOC_Os05g04070 | Os05g0131100 | - | Detail |
| C1H5g23202 | 5:1,599,408-1,603,800 | - | C2H5g08847 | - | LOC_Os05g04110 | Os05g0131401 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g003408 | 1:1,872,307-1,873,809 | + | C1H1g20192 | C2H1g13473 | LOC_Os01g04880 | Os01g0141900 | - | Detail |
| CX1g004217 | 1:1,874,758-1,879,112 | - | C1H1g08627 | C2H1g10525 | LOC_Os01g04900 | Os01g0142100 | - | Detail |
| CX1g004602 | 1:1,879,352-1,881,194 | + | C1H1g24636 | C2H1g29642 | LOC_Os01g04910 | Os01g0142200 | - | Detail |
| CX1g005334 | 1:1,883,564-1,886,817 | + | C1H1g21356 | C2H1g02460 | LOC_Os01g04920 | Os01g0142300 | SQD2.2, OsSQD2.2 | Detail |
| CX1g001148 | 1:1,890,781-1,892,178 | - | C1H1g15125 | C2H1g07926 | LOC_Os01g04930 | Os01g0142500 | Os2R_MYB2 | Detail |
| CX1g001236 | 1:1,902,870-1,903,162 | + | - | - | - | Os01g0142600 | - | Detail |
| CX1g007203 | 1:1,905,253-1,907,172 | + | C1H1g12761 | C2H1g24212 | LOC_Os01g04950 | Os01g0142800 | - | Detail |
| CX1g003203 | 1:1,920,913-1,921,086 | - | - | - | - | Os02g0188201 | - | Detail |
| CX1g004805 | 1:1,926,366-1,926,638 | - | - | - | - | Os09g0276600 | - | Detail |
| CX1g001789 | 1:1,949,150-1,952,169 | - | C1H1g03229 | C2H1g05668 | LOC_Os01g04990 | Os01g0143100 | - | Detail |
| CX1g006394 | 1:1,955,037-1,955,932 | + | C1H1g29677 | C2H1g12663 | LOC_Os01g05000 | - | - | Detail |
| CX1g006849 | 1:1,960,391-1,962,853 | - | C1H1g24343 | C2H1g15469 | LOC_Os01g05020 | Os01g0143400 | - | Detail |
| CX1g004152 | 1:1,976,174-1,976,395 | - | - | C2H1g22860 | LOC_Os01g05064 | Os01g0143900 | - | Detail |
| CX1g005129 | 1:1,977,814-1,983,647 | - | C1H1g10063 | C2H1g23660 | LOC_Os01g05070 | Os01g0144000 | - | Detail |
| CX1g001193 | 1:1,985,293-1,986,459 | + | C1H1g07723 | C2H3g05697 | LOC_Os01g05090 | Os01g0144200 | - | Detail |
| CX1g000107 | 1:1,987,112-1,988,574 | - | C1H1g29569 | C2H1g12529 | LOC_Os01g05100 | Os01g0144300 | - | Detail |
| CX1g000964 | 1:1,989,784-1,995,434 | - | C1H1g20324 | C2H1g15155 | - | Os01g0144340 | - | Detail |
| CX1g006895 | 1:1,999,259-2,001,196 | - | C1H1g21842 | C2H1g26621 | LOC_Os01g05120 | Os01g0144500 | - | Detail |
| CX1g006746 | 1:2,001,899-2,004,305 | + | C1H1g24926 | C2H1g18449 | LOC_Os01g05130 | Os01g0144600 | - | Detail |
| CX1g003652 | 1:2,004,930-2,006,178 | + | C1H1g24429 | C2H1g12155 | LOC_Os01g05140 | Os01g0144700 | - | Detail |