| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H2g18111 | 2:3,789,797-3,790,183 | - | C1H2g06394 | CX2g022788 | LOC_Os02g08200 | Os02g0178600 | - | Detail |
| C2H2g23988 | 2:3,801,645-3,802,374 | + | C1H2g04350 | CX2g021716 | LOC_Os02g08220 | Os02g0178700 | OsbHLH157 | Detail |
| C2H2g27041 | 2:3,803,596-3,811,005 | - | C1H2g14635 | CX2g019198 | LOC_Os02g08230 | Os02g0178800 | OsGL1-2 | Detail |
| C2H2g11136 | 2:3,839,562-3,850,305 | + | C1H2g00884 | CX2g022017 | LOC_Os02g08260 | Os02g0179100 | - | Detail |
| C2H2g22090 | 2:3,853,339-3,856,069 | - | C1H2g27338 | CX2g024480 | LOC_Os02g08270 | Os02g0179200 | - | Detail |
| C2H2g18129 | 2:3,861,372-3,866,294 | + | C1H2g15683 | CX2g023864 | LOC_Os02g08300 | Os02g0179300 | - | Detail |
| C2H2g12176 | 2:3,866,690-3,868,763 | - | C1H2g09345 | CX2g022399 | LOC_Os02g08310 | Os02g0179400 | - | Detail |
| C2H2g24288 | 2:3,875,760-3,879,721 | + | C1H2g30953 | CX2g020585 | LOC_Os02g08320 | Os02g0179500 | - | Detail |
| C2H2g01634 | 2:3,884,773-3,890,017 | - | C1H2g23751 | CX2g020510 | LOC_Os02g08350 | Os02g0179800 | - | Detail |
| C2H2g05800 | 2:3,892,324-3,901,435 | + | C1H2g17009 | CX2g023636 | LOC_Os02g08360 | Os02g0179900 | - | Detail |
| C2H2g08895 | 2:3,902,911-3,907,387 | + | C1H2g04017 | CX2g019636 | LOC_Os02g08364 | Os02g0180000 | - | Detail |
| C2H2g28931 | 2:3,907,742-3,909,934 | - | C1H2g13865 | CX2g022824 | LOC_Os02g08370 | Os02g0180100 | - | Detail |
| C2H2g25419 | 2:3,911,567-3,914,638 | + | C1H2g02146 | CX2g023398 | LOC_Os02g08380 | Os02g0180200 | LA2, LTA1 | Detail |
| C2H2g28103 | 2:3,930,566-3,932,116 | + | C1H2g01164 | CX2g022601 | LOC_Os02g08400 | Os02g0180400 | HHC2 | Detail |
| C2H2g19969 | 2:3,935,334-3,937,852 | - | C1H2g08033 | CX2g022893 | LOC_Os02g08410 | Os02g0180500 | - | Detail |
| C2H2g21393 | 2:3,942,651-3,945,609 | + | C1H2g12941 | CX2g022487 | LOC_Os02g08420 | Os02g0180700 | OsCCR21 | Detail |
| C2H2g08597 | 2:3,994,595-3,996,580 | + | C1H2g19399 | CX2g020326 | LOC_Os02g08440 | Os02g0181300 | WRKY71, OsWRKY71 | Detail |
| C2H2g13400 | 2:4,008,159-4,009,267 | + | C1H2g31251 | CX2g018962 | LOC_Os02g08470 | Os02g0181700 | - | Detail |
| C2H2g22677 | 2:4,012,577-4,016,528 | + | C1H2g13602 | CX2g021549 | LOC_Os02g08480 | Os02g0181800 | - | Detail |
| C2H2g06559 | 2:4,017,441-4,024,330 | - | C1H2g14304 | CX2g021572 | LOC_Os02g08490 | Os02g0181900 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX5g040878 | 5:24,759,328-24,762,980 | - | C1H5g06040 | C2H5g13073 | LOC_Os05g51530 | Os05g0593100 | - | Detail |
| CX5g039758 | 5:24,764,376-24,765,571 | - | C1H5g29585 | C2H5g03858 | LOC_Os05g51540 | Os05g0593200 | - | Detail |
| CX5g036829 | 5:24,767,372-24,777,608 | - | C1H5g12721 | C2H5g22607 | LOC_Os05g51550 | Os05g0593550 | - | Detail |
| CX5g038490 | 5:24,781,550-24,785,258 | - | C1H5g20997 | C2H5g29211 | LOC_Os05g51560 | Os05g0593800 | - | Detail |
| CX5g040981 | 5:24,789,059-24,790,492 | - | C1H5g28104 | C2H5g25800 | LOC_Os05g51570 | Os05g0593900 | - | Detail |
| CX5g037849 | 5:24,796,134-24,796,967 | - | C1H5g28669 | C2H5g28633 | LOC_Os05g51590 | Os05g0594100 | - | Detail |
| CX5g040080 | 5:24,797,747-24,802,993 | - | C1H5g07980 | C2H5g27012 | LOC_Os05g51610 | Os05g0594200 | OsCAX1b | Detail |
| CX5g039004 | 5:24,805,142-24,805,405 | - | - | - | - | - | - | Detail |
| CX5g038359 | 5:24,815,399-24,820,515 | - | C1H5g15566 | C2H5g24138 | LOC_Os05g51620 | Os05g0594500 | - | Detail |
| CX5g041019 | 5:24,821,261-24,821,428 | - | - | - | - | - | - | Detail |
| CX5g041049 | 5:24,830,231-24,836,256 | + | C1H5g26110 | C2H5g08909 | LOC_Os05g51630 | Os05g0594700 | - | Detail |
| CX5g039720 | 5:24,838,133-24,840,751 | - | C1H5g09316 | C2H5g25499 | LOC_Os05g51640 | Os05g0594800 | - | Detail |
| CX5g039507 | 5:24,844,710-24,845,282 | - | C1H5g07547 | C2H5g18619 | LOC_Os05g51660 | Os05g0595000 | - | Detail |
| CX5g040157 | 5:24,847,860-24,848,102 | + | - | C2H5g26605 | - | Os01g0184200 | - | Detail |
| CX5g037190 | 5:24,855,273-24,858,687 | + | C1H5g22966 | C2H5g04566 | LOC_Os05g51670 | Os05g0595100 | OsUGE1, OsUGE-1, UGE1, UGE-1, BP1 | Detail |
| CX5g039657 | 5:24,862,860-24,863,594 | - | C1H5g17200 | C2H5g03425 | LOC_Os05g51680 | Os05g0595200 | - | Detail |
| CX5g036970 | 5:24,879,567-24,879,728 | + | - | - | - | - | - | Detail |
| CX5g037572 | 5:24,883,369-24,886,458 | + | C1H5g29705 | C2H5g00689 | LOC_Os05g51690 | Os05g0595300 | CRCT, NRR, NRRa | Detail |
| CX5g038125 | 5:24,887,467-24,890,023 | - | C1H5g10995 | C2H5g25216 | LOC_Os05g51700 | Os05g0595400 | - | Detail |
| CX5g041076 | 5:24,890,860-24,892,958 | - | C1H5g27674 | C2H5g14814 | LOC_Os05g51710 | Os05g0595500 | - | Detail |