| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g13813 | 4:16,378,763-16,381,963 | + | C2H4g17117 | CX4g031777 | LOC_Os04g31790 | Os04g0387300 | - | Detail |
| C1H4g20734 | 4:16,387,778-16,403,783 | + | C2H4g01397 | CX4g031777 | LOC_Os04g31804 | Os04g0387300 | - | Detail |
| C1H4g27855 | 4:16,415,182-16,416,463 | + | C2H4g11321 | CX4g036291 | LOC_Os04g31880 | Os04g0388000 | - | Detail |
| C1H4g11099 | 4:16,441,850-16,449,521 | + | C2H4g19348 | CX4g033923 | LOC_Os04g31900 | Os04g0388500 | - | Detail |
| C1H4g07543 | 4:16,450,179-16,452,687 | - | C2H4g18326 | CX4g035641 | LOC_Os04g31910 | Os04g0388601 | - | Detail |
| C1H4g09954 | 4:16,458,204-16,468,604 | + | C2H4g10433 | CX4g031743 | LOC_Os04g31924 | Os04g0388700 | - | Detail |
| C1H4g17922 | 4:16,470,103-16,473,271 | - | C2H4g16596 | CX4g034481 | LOC_Os04g31950 | Os04g0388900 | - | Detail |
| C1H4g20118 | 4:16,489,416-16,490,904 | - | - | - | - | - | - | Detail |
| C1H4g25893 | 4:16,498,043-16,504,824 | + | C2H4g17777 | CX4g032050 | LOC_Os04g32020 | Os04g0390000 | - | Detail |
| C1H4g28581 | 4:16,510,500-16,513,279 | + | C2H4g21035 | CX4g035509 | LOC_Os04g32030 | Os04g0390100 | - | Detail |
| C1H4g16304 | 4:16,557,149-16,561,643 | + | C2H4g12067 | CX4g036446 | LOC_Os04g32050 | Os04g0390500 | - | Detail |
| C1H4g23832 | 4:16,563,183-16,567,783 | + | C2H4g09335 | CX4g035843 | LOC_Os04g32060 | Os04g0390600 | - | Detail |
| C1H4g03957 | 4:16,570,725-16,572,527 | + | C2H4g06959 | CX4g033273 | LOC_Os04g32070 | Os04g0390700 | - | Detail |
| C1H4g22009 | 4:16,573,424-16,575,488 | + | C2H4g08791 | CX4g035026 | LOC_Os04g32080 | Os04g0390800 | - | Detail |
| C1H4g26683 | 4:16,577,854-16,583,032 | - | C2H4g28012 | CX4g032317 | LOC_Os04g32090 | Os04g0391000 | - | Detail |
| C1H4g07603 | 4:16,602,744-16,604,889 | + | C2H4g26928 | CX4g031849 | LOC_Os04g32110 | Os04g0391500 | - | Detail |
| C1H4g14710 | 4:16,612,847-16,616,898 | + | C2H4g25707 | CX4g034277 | LOC_Os04g32150 | Os04g0391900 | - | Detail |
| C1H4g22887 | 4:16,628,546-16,630,383 | - | C2H4g26332 | - | LOC_Os04g32210 | Os04g0392500 | - | Detail |
| C1H4g04737 | 4:16,649,505-16,649,987 | + | C2H4g26332 | - | LOC_Os04g32210 | Os04g0392500 | - | Detail |
| C1H4g19101 | 4:16,652,533-16,652,892 | - | C2H4g00904 | CX4g034327 | - | - | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX5g040878 | 5:24,759,328-24,762,980 | - | C1H5g06040 | C2H5g13073 | LOC_Os05g51530 | Os05g0593100 | - | Detail |
| CX5g039758 | 5:24,764,376-24,765,571 | - | C1H5g29585 | C2H5g03858 | LOC_Os05g51540 | Os05g0593200 | - | Detail |
| CX5g036829 | 5:24,767,372-24,777,608 | - | C1H5g12721 | C2H5g22607 | LOC_Os05g51550 | Os05g0593550 | - | Detail |
| CX5g038490 | 5:24,781,550-24,785,258 | - | C1H5g20997 | C2H5g29211 | LOC_Os05g51560 | Os05g0593800 | - | Detail |
| CX5g040981 | 5:24,789,059-24,790,492 | - | C1H5g28104 | C2H5g25800 | LOC_Os05g51570 | Os05g0593900 | - | Detail |
| CX5g037849 | 5:24,796,134-24,796,967 | - | C1H5g28669 | C2H5g28633 | LOC_Os05g51590 | Os05g0594100 | - | Detail |
| CX5g040080 | 5:24,797,747-24,802,993 | - | C1H5g07980 | C2H5g27012 | LOC_Os05g51610 | Os05g0594200 | OsCAX1b | Detail |
| CX5g039004 | 5:24,805,142-24,805,405 | - | - | - | - | - | - | Detail |
| CX5g038359 | 5:24,815,399-24,820,515 | - | C1H5g15566 | C2H5g24138 | LOC_Os05g51620 | Os05g0594500 | - | Detail |
| CX5g041019 | 5:24,821,261-24,821,428 | - | - | - | - | - | - | Detail |
| CX5g041049 | 5:24,830,231-24,836,256 | + | C1H5g26110 | C2H5g08909 | LOC_Os05g51630 | Os05g0594700 | - | Detail |
| CX5g039720 | 5:24,838,133-24,840,751 | - | C1H5g09316 | C2H5g25499 | LOC_Os05g51640 | Os05g0594800 | - | Detail |
| CX5g039507 | 5:24,844,710-24,845,282 | - | C1H5g07547 | C2H5g18619 | LOC_Os05g51660 | Os05g0595000 | - | Detail |
| CX5g040157 | 5:24,847,860-24,848,102 | + | - | C2H5g26605 | - | Os01g0184200 | - | Detail |
| CX5g037190 | 5:24,855,273-24,858,687 | + | C1H5g22966 | C2H5g04566 | LOC_Os05g51670 | Os05g0595100 | OsUGE1, OsUGE-1, UGE1, UGE-1, BP1 | Detail |
| CX5g039657 | 5:24,862,860-24,863,594 | - | C1H5g17200 | C2H5g03425 | LOC_Os05g51680 | Os05g0595200 | - | Detail |
| CX5g036970 | 5:24,879,567-24,879,728 | + | - | - | - | - | - | Detail |
| CX5g037572 | 5:24,883,369-24,886,458 | + | C1H5g29705 | C2H5g00689 | LOC_Os05g51690 | Os05g0595300 | CRCT, NRR, NRRa | Detail |
| CX5g038125 | 5:24,887,467-24,890,023 | - | C1H5g10995 | C2H5g25216 | LOC_Os05g51700 | Os05g0595400 | - | Detail |
| CX5g041076 | 5:24,890,860-24,892,958 | - | C1H5g27674 | C2H5g14814 | LOC_Os05g51710 | Os05g0595500 | - | Detail |