| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g31714 | 3:3,524,674-3,527,364 | - | C2H3g07082 | CX3g025943 | LOC_Os03g19900 | Os03g0176300 | - | Detail |
| C1H3g29070 | 3:3,531,557-3,532,000 | + | - | CX3g029598 | LOC_Os03g07950 | Os03g0176500 | - | Detail |
| C1H3g15283 | 3:3,535,670-3,538,136 | - | C2H3g21895 | CX3g030266 | LOC_Os03g07960 | Os03g0176700 | - | Detail |
| C1H3g23456 | 3:3,539,632-3,543,426 | - | C2H3g00013 | CX3g029368 | LOC_Os03g07970 | Os03g0176800 | - | Detail |
| C1H3g29339 | 3:3,545,081-3,545,401 | - | C2H3g04928 | CX3g028066 | LOC_Os03g07980 | Os03g0176900 | - | Detail |
| C1H3g11831 | 3:3,547,433-3,550,737 | + | C2H3g13522 | CX3g029737 | LOC_Os03g07990 | Os03g0177000 | - | Detail |
| C1H3g26527 | 3:3,551,746-3,555,617 | + | C2H3g03958 | CX3g030435 | LOC_Os03g08000 | Os03g0177300 | - | Detail |
| C1H3g16670 | 3:3,556,288-3,559,286 | + | C2H3g29734 | CX3g025284 | LOC_Os03g08050 | Os03g0177900 | - | Detail |
| C1H3g02996 | 3:3,562,431-3,564,801 | + | C2H3g13691 | CX3g028070 | LOC_Os03g08050 | Os03g0177500 | OsEF1A | Detail |
| C1H3g00802 | 3:3,571,950-3,575,270 | + | C2H3g13691 | CX3g028070 | LOC_Os03g08050 | Os03g0177400 | - | Detail |
| C1H3g04475 | 3:3,578,437-3,581,379 | + | C2H3g13691 | CX3g025284 | LOC_Os03g08010 | Os03g0177500 | OsEF1A | Detail |
| C1H3g20350 | 3:3,581,457-3,588,568 | - | C2H3g00449 | CX3g028367 | LOC_Os03g08070 | Os03g0178100 | - | Detail |
| C1H3g15649 | 3:3,591,581-3,593,353 | + | C2H3g25180 | CX3g027428 | LOC_Os03g08080 | Os03g0178200 | - | Detail |
| C1H3g27650 | 3:3,593,500-3,594,715 | - | C2H3g26133 | CX3g029291 | LOC_Os03g08090 | Os03g0178300 | - | Detail |
| C1H3g28165 | 3:3,595,771-3,598,977 | - | C2H3g08383 | CX3g026682 | LOC_Os03g08100 | Os03g0178400 | - | Detail |
| C1H3g16865 | 3:3,600,829-3,605,538 | - | C2H3g20309 | CX3g026682 | LOC_Os03g08110 | Os03g0178500 | - | Detail |
| C1H3g20528 | 3:3,609,374-3,616,052 | + | C2H3g04420 | CX3g027590 | LOC_Os03g08140 | Os03g0179000 | OsTTLL12 | Detail |
| C1H3g07823 | 3:3,616,375-3,617,052 | + | C2H3g12070 | CX3g025130 | LOC_Os03g08150 | Os03g0179100 | - | Detail |
| C1H3g18493 | 3:3,617,875-3,619,387 | + | C2H3g20817 | CX3g029368 | LOC_Os03g07750 | Os03g0179200 | - | Detail |
| C1H3g14467 | 3:3,619,519-3,620,575 | + | C2H3g00013 | CX3g029368 | LOC_Os03g07970 | Os03g0176800 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX5g040878 | 5:24,759,328-24,762,980 | - | C1H5g06040 | C2H5g13073 | LOC_Os05g51530 | Os05g0593100 | - | Detail |
| CX5g039758 | 5:24,764,376-24,765,571 | - | C1H5g29585 | C2H5g03858 | LOC_Os05g51540 | Os05g0593200 | - | Detail |
| CX5g036829 | 5:24,767,372-24,777,608 | - | C1H5g12721 | C2H5g22607 | LOC_Os05g51550 | Os05g0593550 | - | Detail |
| CX5g038490 | 5:24,781,550-24,785,258 | - | C1H5g20997 | C2H5g29211 | LOC_Os05g51560 | Os05g0593800 | - | Detail |
| CX5g040981 | 5:24,789,059-24,790,492 | - | C1H5g28104 | C2H5g25800 | LOC_Os05g51570 | Os05g0593900 | - | Detail |
| CX5g037849 | 5:24,796,134-24,796,967 | - | C1H5g28669 | C2H5g28633 | LOC_Os05g51590 | Os05g0594100 | - | Detail |
| CX5g040080 | 5:24,797,747-24,802,993 | - | C1H5g07980 | C2H5g27012 | LOC_Os05g51610 | Os05g0594200 | OsCAX1b | Detail |
| CX5g039004 | 5:24,805,142-24,805,405 | - | - | - | - | - | - | Detail |
| CX5g038359 | 5:24,815,399-24,820,515 | - | C1H5g15566 | C2H5g24138 | LOC_Os05g51620 | Os05g0594500 | - | Detail |
| CX5g041019 | 5:24,821,261-24,821,428 | - | - | - | - | - | - | Detail |
| CX5g041049 | 5:24,830,231-24,836,256 | + | C1H5g26110 | C2H5g08909 | LOC_Os05g51630 | Os05g0594700 | - | Detail |
| CX5g039720 | 5:24,838,133-24,840,751 | - | C1H5g09316 | C2H5g25499 | LOC_Os05g51640 | Os05g0594800 | - | Detail |
| CX5g039507 | 5:24,844,710-24,845,282 | - | C1H5g07547 | C2H5g18619 | LOC_Os05g51660 | Os05g0595000 | - | Detail |
| CX5g040157 | 5:24,847,860-24,848,102 | + | - | C2H5g26605 | - | Os01g0184200 | - | Detail |
| CX5g037190 | 5:24,855,273-24,858,687 | + | C1H5g22966 | C2H5g04566 | LOC_Os05g51670 | Os05g0595100 | OsUGE1, OsUGE-1, UGE1, UGE-1, BP1 | Detail |
| CX5g039657 | 5:24,862,860-24,863,594 | - | C1H5g17200 | C2H5g03425 | LOC_Os05g51680 | Os05g0595200 | - | Detail |
| CX5g036970 | 5:24,879,567-24,879,728 | + | - | - | - | - | - | Detail |
| CX5g037572 | 5:24,883,369-24,886,458 | + | C1H5g29705 | C2H5g00689 | LOC_Os05g51690 | Os05g0595300 | CRCT, NRR, NRRa | Detail |
| CX5g038125 | 5:24,887,467-24,890,023 | - | C1H5g10995 | C2H5g25216 | LOC_Os05g51700 | Os05g0595400 | - | Detail |
| CX5g041076 | 5:24,890,860-24,892,958 | - | C1H5g27674 | C2H5g14814 | LOC_Os05g51710 | Os05g0595500 | - | Detail |