| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H5g21575 | 5:14,557,218-14,563,303 | - | C2H5g03996 | CX5g037164 | LOC_Os05g30950 | Os05g0373000 | - | Detail |
| C1H5g18792 | 5:14,570,213-14,576,680 | + | C2H5g03759 | CX5g040615 | LOC_Os05g30970 | Os05g0373300 | OsBON3 | Detail |
| C1H5g29105 | 5:14,588,561-14,593,982 | + | C2H5g18271 | CX5g040352 | LOC_Os05g30980 | Os05g0373400 | - | Detail |
| C1H5g31068 | 5:14,596,057-14,600,780 | - | C2H5g27690 | CX5g038850 | LOC_Os05g30990 | Os05g0373500 | - | Detail |
| C1H5g09200 | 5:14,607,200-14,608,804 | + | C2H5g08611 | CX5g039863 | LOC_Os05g31000 | Os05g0373700 | - | Detail |
| C1H5g04117 | 5:14,614,560-14,618,597 | + | C2H5g03401 | - | - | - | - | Detail |
| C1H5g20196 | 5:14,630,864-14,632,779 | + | C2H5g30069 | CX5g039645 | LOC_Os05g31040 | Os05g0374200 | OsCKX9 | Detail |
| C1H5g11987 | 5:14,641,133-14,651,806 | + | C2H5g03570 | CX5g037517 | LOC_Os05g31056 | Os05g0374600 | - | Detail |
| C1H5g22476 | 5:14,665,010-14,670,853 | - | C2H5g20713 | CX5g039341 | LOC_Os05g31110 | Os05g0375100 | OsHXK10 | Detail |
| C1H5g31731 | 5:14,677,338-14,679,214 | - | C2H5g07936 | CX5g037077 | LOC_Os05g32750 | Os05g0227800 | - | Detail |
| C1H5g21966 | 5:14,689,363-14,694,077 | - | C2H5g21390 | CX5g036757 | LOC_Os05g31140 | Os05g0375400 | OsEGL1 | Detail |
| C1H5g29377 | 5:14,709,932-14,711,512 | - | - | - | - | Os05g0375532 | - | Detail |
| C1H5g26423 | 5:14,710,515-14,713,788 | + | C2H5g07216 | CX5g038239 | LOC_Os05g31160 | Os05g0375600 | - | Detail |
| C1H5g00315 | 5:14,716,982-14,718,400 | - | C2H5g15682 | CX5g039681 | LOC_Os05g31170 | Os05g0375700 | - | Detail |
| C1H5g20894 | 5:14,725,207-14,732,155 | - | C2H5g06087 | CX5g039310 | LOC_Os05g31200 | Os05g0376000 | - | Detail |
| C1H5g02831 | 5:14,734,907-14,741,350 | - | C2H5g11462 | CX5g038768 | LOC_Os05g31254 | Os05g0376600 | - | Detail |
| C1H5g06568 | 5:14,743,016-14,743,763 | - | C2H5g10157 | CX5g038571 | LOC_Os05g31280 | Os05g0376800 | - | Detail |
| C1H5g12763 | 5:14,748,368-14,750,791 | - | C2H5g00006 | CX5g040067 | LOC_Os05g31290 | Os05g0377000 | - | Detail |
| C1H5g27622 | 5:14,768,557-14,768,700 | + | C2H5g17233 | - | LOC_Os05g31370 | - | - | Detail |
| C1H5g14584 | 5:14,771,967-14,773,604 | + | C2H5g14904 | CX5g040971 | LOC_Os05g31380 | Os05g0378200 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g000200 | 1:23,829,787-23,830,011 | + | C1H1g18988 | - | - | - | - | Detail |
| CX1g004786 | 1:23,832,570-23,832,902 | + | - | - | - | - | - | Detail |
| CX1g002002 | 1:23,835,416-23,839,264 | + | C1H1g31021 | C2H1g08798 | LOC_Os01g46840 | Os01g0656900 | - | Detail |
| CX1g004768 | 1:23,840,181-23,842,254 | + | C1H1g21539 | C2H1g22347 | LOC_Os01g46850 | Os01g0657000 | - | Detail |
| CX1g000538 | 1:23,842,963-23,844,492 | - | C1H1g07661 | C2H1g08096 | LOC_Os01g46860 | Os01g0657100 | PT11, OsPT11, PHT1-11, OsPht1;11, ORYsa;PHT1;11 | Detail |
| CX1g007069 | 1:23,851,100-23,851,999 | - | C1H1g08851 | C2H1g00754 | LOC_Os01g46870 | Os01g0657400 | - | Detail |
| CX1g000193 | 1:23,882,543-23,885,601 | - | C1H1g13139 | C2H1g24228 | LOC_Os01g46926 | Os01g0819500 | - | Detail |
| CX1g000846 | 1:23,886,705-23,889,997 | - | C1H1g10996 | C2H1g04871 | LOC_Os01g46932 | Os01g0658500 | - | Detail |
| CX1g005848 | 1:23,891,607-23,893,000 | + | C1H1g26752 | C2H1g09647 | LOC_Os01g46940 | Os01g0658600 | - | Detail |
| CX1g001447 | 1:23,893,375-23,896,611 | - | C1H1g21735 | C2H1g29071 | LOC_Os01g46950 | Os01g0658700 | - | Detail |
| CX1g002678 | 1:23,901,880-23,905,047 | - | C1H1g14446 | C2H1g04805 | LOC_Os01g46970 | Os01g0658900 | OSBZ8 | Detail |
| CX1g006783 | 1:23,915,372-23,919,742 | + | C1H1g08063 | C2H1g26234 | LOC_Os01g46980 | Os01g0659200 | OsVHA-E1, GPA8 | Detail |
| CX1g002250 | 1:23,940,362-23,940,538 | - | - | - | - | - | - | Detail |
| CX1g000191 | 1:23,945,332-23,946,222 | + | C1H1g01372 | - | LOC_Os01g47040 | Os01g0659800 | - | Detail |
| CX1g000172 | 1:23,956,664-23,957,899 | + | C1H1g17216 | C2H1g17847 | LOC_Os01g47050 | Os01g0659900 | OsFBK1 | Detail |
| CX1g006313 | 1:23,959,946-23,966,785 | - | C1H1g09346 | C2H1g19011 | LOC_Os01g47080 | Os01g0660300 | OsPK6 | Detail |
| CX1g004522 | 1:23,968,195-23,968,413 | + | - | - | - | - | - | Detail |
| CX1g001099 | 1:23,972,283-23,973,062 | - | C1H1g28789 | C2H1g28481 | LOC_Os01g47100 | Os01g0660500 | - | Detail |
| CX1g001902 | 1:23,979,157-23,979,532 | + | - | - | - | - | - | Detail |
| CX1g006598 | 1:23,981,118-23,982,347 | - | C1H1g31872 | C2H1g26897 | LOC_Os01g47130 | Os01g0660700 | - | Detail |