| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H5g08501 | 5:13,091,501-13,092,025 | + | C2H5g20870 | CX5g038186 | LOC_Os05g27780 | Os05g0344200 | - | Detail |
| C1H5g01346 | 5:13,104,959-13,107,752 | - | C2H5g20264 | CX5g038759 | LOC_Os05g27749 | Os05g0343800 | - | Detail |
| C1H5g27385 | 5:13,117,535-13,118,678 | - | C2H5g04895 | CX5g038298 | LOC_Os05g28150 | Os05g0574000 | - | Detail |
| C1H5g10495 | 5:13,124,228-13,124,955 | - | C2H5g24296 | - | LOC_Os05g28170 | Os05g0349000 | - | Detail |
| C1H5g28470 | 5:13,125,004-13,125,391 | - | C2H5g01277 | - | - | - | - | Detail |
| C1H5g17654 | 5:13,129,514-13,140,472 | - | C2H5g21735 | CX5g038977 | LOC_Os05g28180 | Os05g0349200 | - | Detail |
| C1H5g06860 | 5:13,154,074-13,154,778 | + | C2H5g17650 | CX5g037238 | - | Os05g0349400 | - | Detail |
| C1H5g27836 | 5:13,155,919-13,157,340 | - | C2H5g21599 | CX5g037323 | LOC_Os05g28190 | Os05g0349500 | - | Detail |
| C1H5g13828 | 5:13,162,845-13,168,627 | + | C2H5g06848 | CX5g039025 | LOC_Os05g28200 | Os05g0349700 | - | Detail |
| C1H5g05895 | 5:13,169,734-13,170,127 | - | C2H5g23580 | CX5g036783 | LOC_Os05g28210 | Os05g0349800 | - | Detail |
| C1H5g13261 | 5:13,172,837-13,173,611 | - | C2H5g02639 | - | - | - | - | Detail |
| C1H5g14457 | 5:13,192,670-13,196,676 | + | C2H5g29583 | CX5g039857 | LOC_Os05g28280 | Os05g0350500 | - | Detail |
| C1H5g17562 | 5:13,200,849-13,203,424 | + | C2H5g21599 | CX5g039007 | LOC_Os05g28290 | Os05g0350600 | - | Detail |
| C1H5g16123 | 5:13,206,195-13,217,685 | + | C2H5g07484 | CX5g037642 | LOC_Os05g28300 | Os05g0350700 | - | Detail |
| C1H5g17008 | 5:13,222,024-13,222,950 | - | C2H5g28285 | CX5g040736 | LOC_Os05g28320 | Os05g0350900 | Os2R_MYB54 | Detail |
| C1H5g12930 | 5:13,237,625-13,238,428 | - | C2H5g09274 | CX5g038612 | LOC_Os05g28350 | Os05g0351200 | - | Detail |
| C1H5g29097 | 5:13,259,584-13,262,512 | - | C2H5g17200 | CX5g038755 | LOC_Os05g28370 | Os05g0351500 | - | Detail |
| C1H5g24445 | 5:13,285,991-13,290,668 | + | C2H5g14159 | CX5g039488 | LOC_Os05g28460 | Os05g0352700 | - | Detail |
| C1H5g20523 | 5:13,295,782-13,297,507 | + | C2H5g18746 | CX5g039121 | - | - | - | Detail |
| C1H5g18199 | 5:13,302,108-13,306,187 | + | C2H5g08977 | CX5g038297 | LOC_Os05g28470 | Os05g0352750 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX5g040625 | 5:24,399,824-24,400,985 | + | C1H5g25754 | C2H5g06430 | LOC_Os05g50700 | Os05g0183100 | OsWRKY67 | Detail |
| CX5g038552 | 5:24,403,273-24,403,843 | - | C1H5g23722 | C2H5g22409 | LOC_Os05g50710 | Os05g0584200 | - | Detail |
| CX5g037414 | 5:24,405,038-24,405,784 | + | C1H5g29939 | C2H5g01350 | LOC_Os05g50720 | Os05g0584300 | - | Detail |
| CX5g040723 | 5:24,411,175-24,412,130 | - | C1H5g06457 | C2H5g11315 | LOC_Os05g50730 | Os05g0584400 | - | Detail |
| CX5g037383 | 5:24,417,241-24,422,368 | - | C1H5g14305 | C2H5g01570 | LOC_Os05g50750 | Os05g0584600 | - | Detail |
| CX5g038892 | 5:24,439,984-24,440,133 | + | - | - | - | - | - | Detail |
| CX5g039086 | 5:24,449,746-24,451,625 | + | C1H5g05102 | C2H5g08711 | LOC_Os05g50770 | Os05g0584900 | - | Detail |
| CX5g036814 | 5:24,458,964-24,461,290 | + | C1H5g03901 | C2H5g19125 | LOC_Os05g50800 | Os05g0585400 | - | Detail |
| CX5g039624 | 5:24,462,225-24,465,518 | - | C1H5g16468 | C2H5g30392 | LOC_Os05g50810 | Os05g0585500 | OsCPK15 | Detail |
| CX5g039076 | 5:24,471,382-24,473,988 | - | C1H5g12424 | C2H5g10246 | LOC_Os05g50820 | Os05g0585700 | - | Detail |
| CX5g037455 | 5:24,476,167-24,476,445 | + | C1H5g23505 | C2H5g14116 | LOC_Os05g49680 | Os05g0571700 | - | Detail |
| CX5g037322 | 5:24,477,475-24,479,550 | + | C1H5g08867 | C2H5g21671 | LOC_Os05g50830 | Os05g0585800 | - | Detail |
| CX5g039391 | 5:24,480,122-24,484,383 | - | C1H5g02224 | C2H5g07511 | LOC_Os05g50840 | Os05g0585900 | - | Detail |
| CX5g037391 | 5:24,509,036-24,511,770 | + | C1H5g05725 | C2H5g12537 | LOC_Os05g50890 | Os05g0586200 | OsGH3-5, OsGH3.5, OsJAR1, JAR1 | Detail |
| CX5g040329 | 5:24,514,756-24,516,895 | - | C1H5g23433 | C2H5g22033 | LOC_Os05g50900 | Os05g0586300 | OsFAMA | Detail |
| CX5g037684 | 5:24,520,952-24,524,166 | + | C1H5g03676 | C2H5g28495 | LOC_Os05g50910 | Os05g0586400 | - | Detail |
| CX5g037746 | 5:24,528,031-24,530,721 | + | C1H5g31726 | C2H5g17335 | LOC_Os05g50920 | Os05g0586500 | - | Detail |
| CX5g037636 | 5:24,531,666-24,533,592 | + | C1H5g23972 | C2H5g13829 | LOC_Os05g50930 | Os05g0586600 | OsSIG5 | Detail |
| CX5g038653 | 5:24,534,803-24,535,891 | - | - | - | - | Os05g0586800 | - | Detail |
| CX5g037240 | 5:24,535,056-24,536,054 | + | C1H5g23972 | C2H5g13829 | LOC_Os05g50940 | Os05g0586700 | - | Detail |