| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H2g06764 | 2:4,415,986-4,419,645 | + | C2H2g11577 | CX2g024862 | LOC_Os02g09620 | Os02g0189300 | - | Detail |
| C1H2g26037 | 2:4,420,482-4,421,505 | - | C2H2g10166 | CX2g024704 | LOC_Os02g09630 | Os02g0189400 | - | Detail |
| C1H2g12021 | 2:4,430,237-4,430,836 | - | C2H2g02446 | CX2g020740 | LOC_Os02g09650 | Os02g0797100 | - | Detail |
| C1H2g06273 | 2:4,437,020-4,444,070 | + | C2H2g24841 | - | - | - | - | Detail |
| C1H2g06467 | 2:4,438,145-4,440,467 | - | C2H2g02506 | CX2g022600 | LOC_Os02g09720 | Os02g0189800 | - | Detail |
| C1H2g01542 | 2:4,447,905-4,451,405 | - | C2H2g14951 | - | - | - | - | Detail |
| C1H2g30083 | 2:4,467,183-4,476,616 | + | C2H2g24841 | - | - | Os02g0189900 | - | Detail |
| C1H2g16474 | 2:4,469,625-4,474,498 | - | C2H2g18329 | CX2g021632 | LOC_Os02g09720 | Os02g0190000 | - | Detail |
| C1H2g07631 | 2:4,477,997-4,479,524 | + | C2H2g22278 | CX2g021632 | LOC_Os02g09710 | Os02g0190100 | - | Detail |
| C1H2g04187 | 2:4,484,254-4,493,683 | - | C2H2g18329 | CX2g021192 | LOC_Os02g09720 | Os02g0190300 | - | Detail |
| C1H2g21943 | 2:4,517,415-4,523,389 | + | C2H2g06769 | CX2g022054 | LOC_Os02g09740 | Os02g0190500 | - | Detail |
| C1H2g24836 | 2:4,524,050-4,525,519 | - | - | CX2g022421 | LOC_Os02g09750 | Os02g0190600 | OsLCYbeta, OsLCYβ | Detail |
| C1H2g15779 | 2:4,528,690-4,529,268 | - | C2H2g16178 | CX2g023142 | LOC_Os02g09760 | Os02g0190700 | - | Detail |
| C1H2g04808 | 2:4,534,144-4,538,120 | - | C2H2g05420 | CX2g021348 | LOC_Os02g09770 | Os02g0190800 | - | Detail |
| C1H2g13385 | 2:4,540,537-4,541,961 | - | C2H2g18343 | CX2g020459 | LOC_Os02g09780 | Os02g0190900 | - | Detail |
| C1H2g24338 | 2:4,558,602-4,561,334 | - | C2H2g20012 | CX2g022282 | LOC_Os02g09790 | Os02g0191000 | NBS-Str1 | Detail |
| C1H2g19462 | 2:4,564,768-4,566,899 | + | C2H2g13140 | CX2g024733 | LOC_Os02g09800 | Os02g0191200 | - | Detail |
| C1H2g16598 | 2:4,569,100-4,573,528 | - | C2H2g19527 | CX2g019369 | LOC_Os02g09810 | Os02g0191300 | OsATL6 | Detail |
| C1H2g02472 | 2:4,576,028-4,578,203 | + | C2H2g07551 | CX2g021648 | LOC_Os02g09820 | Os02g0191500 | - | Detail |
| C1H2g05141 | 2:4,579,357-4,579,866 | - | C2H2g25351 | CX2g022552 | LOC_Os02g09830 | Os02g0191600 | OsbZIP16 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX5g037412 | 5:24,160,890-24,161,807 | - | C1H5g20150 | C2H5g03748 | LOC_Os05g50230 | Os05g0578100 | - | Detail |
| CX5g040349 | 5:24,170,041-24,175,580 | + | C1H5g22642 | C2H5g26536 | LOC_Os05g50250 | Os05g0578500 | - | Detail |
| CX5g039590 | 5:24,179,882-24,185,096 | - | C1H5g30673 | C2H5g28332 | LOC_Os05g50260 | Os05g0578600 | - | Detail |
| CX5g038128 | 5:24,186,054-24,187,248 | + | C1H5g18644 | C2H5g01414 | - | - | - | Detail |
| CX5g040214 | 5:24,190,995-24,191,312 | - | - | - | - | - | - | Detail |
| CX5g037556 | 5:24,196,501-24,197,425 | + | C1H5g30824 | C2H5g24268 | LOC_Os05g50270 | Os05g0578900 | NL1, nl1, OsGATA15, SNFL1 | Detail |
| CX5g037802 | 5:24,198,513-24,202,879 | - | C1H5g28939 | C2H5g28493 | LOC_Os05g50280 | Os05g0579000 | OsERD5 | Detail |
| CX5g037422 | 5:24,203,497-24,203,769 | - | - | - | LOC_Os04g24770 | - | - | Detail |
| CX5g037992 | 5:24,209,814-24,210,815 | + | C1H5g17437 | C2H5g09709 | LOC_Os05g50290 | Os05g0579100 | - | Detail |
| CX5g039421 | 5:24,213,222-24,215,171 | + | C1H5g00625 | C2H5g24355 | LOC_Os05g50300 | Os05g0579200 | - | Detail |
| CX5g038909 | 5:24,217,777-24,218,502 | + | C1H5g28773 | C2H5g30078 | LOC_Os05g50310 | Os05g0579300 | - | Detail |
| CX5g038520 | 5:24,228,525-24,229,641 | - | C1H8g13275 | C2H5g20837 | - | - | - | Detail |
| CX5g037463 | 5:24,230,809-24,231,396 | - | C1H5g25217 | C2H5g16972 | LOC_Os05g50340 | Os05g0579600 | - | Detail |
| CX5g040775 | 5:24,234,004-24,235,902 | - | C1H5g24861 | C2H5g06063 | LOC_Os05g50350 | Os05g0579700 | - | Detail |
| CX5g040870 | 5:24,241,776-24,244,499 | + | C1H5g08314 | C2H5g20886 | LOC_Os05g50360 | Os05g0579800 | - | Detail |
| CX5g040990 | 5:24,249,510-24,249,659 | + | - | - | - | - | - | Detail |
| CX5g038555 | 5:24,252,912-24,259,653 | + | C1H5g24542 | C2H5g02301 | LOC_Os05g50370 | Os05g0579900 | - | Detail |
| CX5g040137 | 5:24,260,874-24,264,249 | - | C1H5g04263 | C2H5g26213 | LOC_Os05g50380 | Os05g0580000 | OsAGPL1, OsAPL3 | Detail |
| CX5g037650 | 5:24,274,703-24,281,787 | + | C1H5g02145 | C2H5g13644 | LOC_Os05g50410 | Os05g0580500 | REC8, OsREC8, OsRad21-4 | Detail |
| CX5g040658 | 5:24,282,865-24,284,922 | + | C1H5g24080 | C2H5g28264 | LOC_Os05g50460 | Os05g0581300 | - | Detail |