| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g18694 | 4:28,658,302-28,658,889 | - | C2H4g14418 | CX4g032908 | LOC_Os04g55240 | Os04g0645200 | - | Detail |
| C1H4g06884 | 4:28,663,063-28,666,905 | - | C2H4g01093 | CX4g036437 | LOC_Os04g55260 | Os04g0645600 | - | Detail |
| C1H4g28592 | 4:28,673,122-28,676,448 | - | C2H4g27076 | CX4g032085 | LOC_Os04g55280 | Os04g0646050 | - | Detail |
| C1H4g12666 | 4:28,677,201-28,678,644 | - | C2H4g00324 | CX4g031654 | LOC_Os04g55290 | Os04g0646100 | - | Detail |
| C1H4g04933 | 4:28,710,655-28,711,314 | - | C2H4g28891 | CX4g032699 | LOC_Os04g55360 | Os04g0647300 | - | Detail |
| C1H4g01013 | 4:28,713,036-28,713,869 | - | C2H4g25523 | CX4g032699 | LOC_Os04g55360 | Os04g0647300 | - | Detail |
| C1H4g17955 | 4:28,734,525-28,738,568 | - | C2H4g00723 | CX4g032705 | LOC_Os04g55410 | Os04g0647800 | - | Detail |
| C1H4g25822 | 4:28,741,443-28,744,608 | + | C2H4g03628 | CX4g034505 | LOC_Os04g55420 | Os04g0647900 | - | Detail |
| C1H4g16013 | 4:28,750,055-28,750,903 | + | C2H4g20686 | CX4g034215 | LOC_Os04g55440 | Os04g0648200 | - | Detail |
| C1H4g25119 | 4:28,755,593-28,760,287 | - | C2H4g26419 | CX4g031467 | LOC_Os04g55480 | Os04g0648500 | - | Detail |
| C1H4g03048 | 4:28,765,828-28,772,012 | + | C2H4g12616 | CX4g032703 | LOC_Os04g55500 | Os04g0648700 | - | Detail |
| C1H4g02593 | 4:28,781,088-28,786,577 | + | C2H4g21483 | CX4g033088 | LOC_Os04g55510 | Os04g0648800 | - | Detail |
| C1H4g09680 | 4:28,821,780-28,824,455 | + | C2H4g14278 | CX4g036135 | LOC_Os04g55560 | Os04g0649100 | SHAT1, AP2/EREBP#043, AP2/EREBP43 | Detail |
| C1H4g00144 | 4:28,830,435-28,836,457 | + | C2H4g17474 | CX4g035239 | LOC_Os04g55570 | Os04g0649200 | - | Detail |
| C1H4g30735 | 4:28,845,828-28,846,709 | - | C2H4g02532 | CX4g032527 | LOC_Os04g55590 | Os04g0649400 | WOX4, OsWOX4, Os WOX4 | Detail |
| C1H4g22307 | 4:28,858,617-28,859,324 | + | C2H4g01325 | - | - | - | - | Detail |
| C1H4g26510 | 4:28,860,405-28,863,982 | - | C2H4g00524 | CX4g031472 | LOC_Os04g55620 | Os04g0649700 | - | Detail |
| C1H4g26377 | 4:28,867,909-28,868,871 | + | C2H4g24247 | CX4g033189 | LOC_Os04g55640 | Os04g0649900 | - | Detail |
| C1H4g19253 | 4:28,875,233-28,877,176 | + | C2H4g10875 | CX4g032778 | - | - | - | Detail |
| C1H4g30646 | 4:28,877,801-28,881,460 | - | C2H4g01573 | CX4g032034 | LOC_Os04g55650 | Os04g0650000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX5g037894 | 5:24,035,153-24,036,646 | + | C1H5g30973 | C2H5g12970 | LOC_Os05g49930 | Os05g0574900 | OsSLRL2 | Detail |
| CX5g039269 | 5:24,044,741-24,045,208 | + | C1H5g16819 | C2H5g03271 | LOC_Os05g49960 | Os05g0576600 | - | Detail |
| CX5g039203 | 5:24,046,481-24,052,568 | + | C1H5g17869 | C2H5g26414 | LOC_Os05g49970 | Os05g0575300 | - | Detail |
| CX5g038622 | 5:24,054,698-24,057,372 | + | C1H5g06409 | C2H5g13759 | LOC_Os05g49980 | Os05g0575400 | - | Detail |
| CX5g040403 | 5:24,066,640-24,067,845 | - | C1H5g22837 | C2H5g20343 | LOC_Os05g50020 | Os05g0539300 | - | Detail |
| CX5g039044 | 5:24,084,521-24,085,684 | + | C1H5g15356 | C2H5g19912 | LOC_Os05g50080 | Os05g0576300 | - | Detail |
| CX5g038256 | 5:24,087,362-24,089,974 | - | C1H5g03069 | C2H5g01394 | LOC_Os05g50090 | Os05g0576500 | - | Detail |
| CX5g039524 | 5:24,091,418-24,091,948 | - | C1H5g16819 | C2H5g03271 | LOC_Os05g50100 | Os05g0576600 | - | Detail |
| CX5g039163 | 5:24,095,371-24,095,895 | - | C1H5g27061 | C2H5g25211 | LOC_Os05g50110 | Os05g0576700 | - | Detail |
| CX5g040507 | 5:24,098,579-24,103,329 | + | C1H5g01077 | C2H5g20547 | LOC_Os05g50120 | Os05g0576800 | OsMPK17 | Detail |
| CX5g036723 | 5:24,106,748-24,109,693 | + | C1H5g03330 | C2H5g06181 | LOC_Os05g50130 | Os01g0643600 | SGD2, OsHOX3, SGD2/OsHOX3 | Detail |
| CX5g040604 | 5:24,110,603-24,112,874 | - | C1H5g30459 | C2H5g24762 | LOC_Os05g50140 | Os05g0576900 | - | Detail |
| CX5g039826 | 5:24,114,652-24,115,734 | + | C1H5g03603 | C2H5g04718 | LOC_Os07g39990 | Os05g0123100 | OsGT43A | Detail |
| CX5g037651 | 5:24,119,361-24,120,272 | - | C1H5g30015 | C2H5g28105 | LOC_Os05g50160 | Os05g0577100 | - | Detail |
| CX5g040119 | 5:24,126,772-24,131,388 | - | C1H5g15586 | C2H5g16560 | LOC_Os05g50170 | Os05g0577200 | - | Detail |
| CX5g040982 | 5:24,133,563-24,134,084 | - | C1H5g18973 | C2H5g18251 | LOC_Os05g50180 | Os05g0577500 | - | Detail |
| CX5g038642 | 5:24,136,031-24,139,088 | - | C1H5g07867 | C2H5g30115 | LOC_Os05g50190 | Os05g0577700 | - | Detail |
| CX5g037985 | 5:24,143,280-24,148,863 | - | C1H5g14939 | C2H5g07752 | LOC_Os05g50200 | Os05g0577800 | - | Detail |
| CX5g040371 | 5:24,149,791-24,154,521 | - | C1H5g25502 | C2H5g09946 | LOC_Os05g50210 | Os05g0577900 | - | Detail |
| CX5g036982 | 5:24,154,919-24,157,156 | + | C1H5g03913 | C2H5g10460 | LOC_Os05g50220 | Os05g0578000 | - | Detail |