| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g29843 | 1:31,135,501-31,136,993 | + | C2H1g27136 | CX1g005345 | LOC_Os01g60520 | Os01g0820700 | - | Detail |
| C1H1g01098 | 1:31,145,075-31,146,136 | - | - | - | - | - | - | Detail |
| C1H1g00049 | 1:31,145,331-31,146,155 | + | - | CX2g019709 | - | - | - | Detail |
| C1H1g16541 | 1:31,149,382-31,151,772 | - | C2H1g23568 | CX1g000164 | LOC_Os01g60600 | Os01g0821300 | OsWRKY108 | Detail |
| C1H1g30388 | 1:31,164,583-31,165,608 | + | C2H1g21075 | CX1g007027 | LOC_Os01g60640 | Os01g0821600 | OsWRKY21 | Detail |
| C1H1g25043 | 1:31,166,201-31,169,757 | - | C2H1g25538 | CX1g000406 | LOC_Os01g60650 | Os01g0821700 | - | Detail |
| C1H1g31255 | 1:31,170,851-31,176,045 | - | C2H1g28094 | CX1g005983 | LOC_Os01g60660 | Os01g0821800 | - | Detail |
| C1H1g11845 | 1:31,180,689-31,184,531 | - | C2H1g18116 | CX1g006557 | LOC_Os01g60670 | Os01g0821900 | - | Detail |
| C1H1g18880 | 1:31,193,272-31,193,784 | + | - | CX1g000167 | LOC_Os01g60690 | - | - | Detail |
| C1H1g15412 | 1:31,195,025-31,199,567 | - | C2H1g14856 | CX1g001048 | LOC_Os01g60700 | Os01g0822200 | - | Detail |
| C1H1g02148 | 1:31,219,932-31,220,573 | - | C2H1g21565 | CX1g001275 | LOC_Os01g60730 | Os01g0822800 | - | Detail |
| C1H1g07733 | 1:31,230,688-31,231,056 | - | C2H1g07180 | CX1g000376 | LOC_Os01g60740 | Os01g0822900 | - | Detail |
| C1H1g31069 | 1:31,242,394-31,243,625 | + | C2H1g28179 | CX1g003897 | LOC_Os01g60770 | Os01g0823100 | - | Detail |
| C1H1g19421 | 1:31,246,524-31,249,528 | + | C2H1g29199 | - | LOC_Os01g60780 | Os01g0823200 | - | Detail |
| C1H1g09909 | 1:31,250,554-31,252,257 | + | C2H1g01001 | CX1g001859 | LOC_Os01g60790 | Os01g0823300 | - | Detail |
| C1H1g09299 | 1:31,253,135-31,255,481 | + | C2H1g22329 | CX1g000409 | LOC_Os01g60800 | Os01g0823400 | - | Detail |
| C1H1g21052 | 1:31,266,017-31,267,159 | - | C2H1g09030 | CX1g003073 | LOC_Os01g60810 | Os01g0823500 | OsOFP6 | Detail |
| C1H1g15235 | 1:31,274,585-31,275,392 | + | C2H1g28368 | CX1g000050 | LOC_Os01g60830 | Os01g0823600 | - | Detail |
| C1H1g00815 | 1:31,275,774-31,277,087 | - | C2H1g25336 | CX1g001515 | LOC_Os01g60850 | Os01g0823700 | - | Detail |
| C1H1g10410 | 1:31,277,816-31,279,173 | + | C2H1g21565 | CX1g002608 | LOC_Os01g58780 | Os01g0690333 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX5g037759 | 5:23,933,511-23,935,574 | - | C1H5g26987 | C2H5g20444 | LOC_Os05g49740 | Os05g0572900 | - | Detail |
| CX5g039397 | 5:23,937,139-23,940,130 | - | C1H5g12531 | C2H5g08690 | LOC_Os05g49750 | Os05g0573000 | - | Detail |
| CX5g036976 | 5:23,942,807-23,946,175 | + | C1H5g06006 | C2H5g17652 | LOC_Os05g49760 | Os05g0573200 | - | Detail |
| CX5g036857 | 5:23,946,862-23,952,509 | - | C1H5g18333 | C2H5g07346 | LOC_Os05g49770 | Os05g0573300 | - | Detail |
| CX5g039259 | 5:23,955,571-23,955,744 | - | - | - | - | Os02g0188201 | - | Detail |
| CX5g040914 | 5:23,966,885-23,968,213 | - | C1H5g06253 | C2H5g23393 | LOC_Os05g43630 | Os05g0183900 | - | Detail |
| CX5g038953 | 5:23,968,663-23,970,097 | - | C1H5g19329 | C2H5g16280 | LOC_Os10g31120 | Os05g0227800 | - | Detail |
| CX5g039933 | 5:23,972,968-23,977,135 | + | C1H5g30361 | C2H5g13745 | LOC_Os05g49780 | Os05g0573500 | HAP3C, OsHAP3C, OsNF-YB-4, NFYB4 | Detail |
| CX5g040236 | 5:23,978,427-23,978,840 | - | C1H5g18248 | C2H5g25143 | LOC_Os05g49790 | Os05g0573600 | - | Detail |
| CX5g037555 | 5:23,981,261-23,984,367 | - | C1H5g00854 | C2H5g09568 | LOC_Os05g49800 | Os05g0573700 | - | Detail |
| CX5g040047 | 5:23,986,708-23,990,993 | + | C1H5g11098 | C2H5g07066 | LOC_Os05g49810 | Os05g0573800 | - | Detail |
| CX5g037660 | 5:23,991,302-23,995,470 | - | C1H5g10056 | C2H5g06386 | LOC_Os05g49820 | Os05g0573900 | - | Detail |
| CX5g038298 | 5:23,999,175-24,000,493 | + | C1H5g18130 | C2H5g04324 | LOC_Os05g49830 | Os05g0574000 | - | Detail |
| CX5g038739 | 5:24,000,739-24,004,549 | - | C1H5g18110 | C2H5g11612 | LOC_Os05g49840 | Os05g0574100 | - | Detail |
| CX5g037745 | 5:24,008,487-24,008,945 | + | C1H5g16150 | C2H5g16314 | LOC_Os05g49860 | Os05g0574300 | - | Detail |
| CX5g037549 | 5:24,011,296-24,014,788 | - | C1H5g12972 | C2H5g21858 | LOC_Os05g49880 | Os05g0574400 | OsMDH5.1 | Detail |
| CX5g040904 | 5:24,017,080-24,019,059 | - | C1H5g25768 | C2H5g16147 | LOC_Os05g49890 | Os05g0574500 | OsRAN2 | Detail |
| CX5g039116 | 5:24,019,791-24,021,353 | - | C1H5g25442 | C2H5g14802 | LOC_Os05g49900 | Os05g0574600 | - | Detail |
| CX5g037295 | 5:24,024,094-24,026,506 | - | C1H5g28327 | C2H5g28664 | LOC_Os05g49910 | Os05g0574700 | - | Detail |
| CX5g038047 | 5:24,027,430-24,030,048 | + | C1H5g15373 | C2H5g08357 | LOC_Os05g49920 | Os05g0574800 | - | Detail |