| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H4g25284 | 4:26,053,158-26,054,280 | - | C1H4g15893 | CX4g035889 | LOC_Os04g51140 | Os04g0600100 | - | Detail |
| C2H4g12319 | 4:26,054,891-26,057,188 | - | C1H4g02523 | CX4g035681 | LOC_Os04g51150 | Os04g0600200 | AOX1A, Ao1-1, AOX1a, OsAOX1a, AOX 1a | Detail |
| C2H4g13155 | 4:26,057,959-26,060,860 | - | C1H4g06092 | CX4g036218 | LOC_Os04g51160 | Os04g0600300 | AOX1B, AOX1b, OsAOX1b | Detail |
| C2H4g11382 | 4:26,062,604-26,064,996 | - | C1H4g28733 | CX4g036257 | LOC_Os04g51166 | Os04g0600400 | - | Detail |
| C2H4g16073 | 4:26,065,855-26,071,021 | - | C1H4g04973 | CX4g033183 | LOC_Os04g51172 | Os04g0600500 | OsBRXL3 | Detail |
| C2H4g00138 | 4:26,079,042-26,083,754 | - | C1H4g07853 | CX4g032625 | LOC_Os04g51180 | Os04g0600800 | COLD1 | Detail |
| C2H4g09942 | 4:26,085,183-26,089,337 | - | C1H4g08504 | CX4g033956 | LOC_Os04g51190 | Os04g0574500 | - | Detail |
| C2H4g25560 | 4:26,102,155-26,103,523 | - | C1H4g18677 | CX4g032272 | LOC_Os04g51240 | Os04g0601400 | - | Detail |
| C2H4g10254 | 4:26,104,987-26,107,216 | - | C1H4g11359 | CX4g033025 | LOC_Os04g51250 | Os04g0601500 | - | Detail |
| C2H4g14874 | 4:26,106,519-26,110,669 | + | C1H4g26178 | CX4g034624 | LOC_Os04g51260 | Os04g0602000 | - | Detail |
| C2H4g01351 | 4:26,111,323-26,112,177 | - | C1H4g02715 | CX4g036413 | LOC_Os04g51270 | Os04g0601700 | - | Detail |
| C2H4g08450 | 4:26,113,702-26,115,692 | + | C1H4g04277 | - | LOC_Os04g51280 | Os04g0601800 | WSP1 | Detail |
| C2H4g18195 | 4:26,116,346-26,119,282 | + | C1H4g31358 | CX4g031538 | LOC_Os04g51300 | Os04g0602100 | - | Detail |
| C2H4g21768 | 4:26,119,417-26,121,708 | - | C1H4g26391 | CX4g033882 | LOC_Os04g51310 | Os04g0602200 | - | Detail |
| C2H4g22043 | 4:26,123,267-26,125,534 | - | C1H4g19881 | CX4g033318 | LOC_Os04g51320 | Os04g0602300 | - | Detail |
| C2H4g12426 | 4:26,127,370-26,131,567 | - | C1H4g05144 | CX4g034293 | LOC_Os04g51330 | Os04g0602400 | - | Detail |
| C2H4g05437 | 4:26,134,548-26,138,254 | + | C1H4g22875 | CX4g033998 | LOC_Os04g51340 | Os04g0602500 | - | Detail |
| C2H4g15861 | 4:26,139,791-26,142,202 | + | C1H4g12838 | CX4g032956 | LOC_Os04g51350 | Os04g0602600 | MPR25 | Detail |
| C2H4g20183 | 4:26,143,347-26,145,256 | - | C1H4g06807 | CX4g034077 | LOC_Os04g51360 | Os04g0602700 | - | Detail |
| C2H4g18022 | 4:26,146,411-26,154,053 | - | C1H4g07013 | CX4g035673 | LOC_Os04g51370 | Os04g0602800 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX5g038841 | 5:23,741,035-23,741,523 | - | - | - | - | - | - | Detail |
| CX5g038165 | 5:23,743,904-23,747,031 | + | C1H5g00985 | C2H5g05526 | LOC_Os05g49300 | Os05g0568100 | - | Detail |
| CX5g036842 | 5:23,749,902-23,751,452 | + | C1H5g09631 | C2H5g04009 | LOC_Os05g49310 | Os05g0568200 | Os2R_MYB61 | Detail |
| CX5g039631 | 5:23,752,854-23,753,387 | - | C1H5g25001 | C2H5g09227 | LOC_Os05g49320 | Os05g0568300 | - | Detail |
| CX5g036834 | 5:23,754,186-23,754,542 | + | - | - | LOC_Os05g49330 | - | - | Detail |
| CX5g037330 | 5:23,757,651-23,758,151 | + | - | - | LOC_Os05g49340 | Os01g0661650 | - | Detail |
| CX5g038436 | 5:23,760,062-23,760,769 | + | C1H5g09281 | C2H5g10434 | LOC_Os05g49350 | Os05g0568600 | - | Detail |
| CX5g038804 | 5:23,763,520-23,764,218 | + | C1H5g06213 | C2H5g00779 | LOC_Os05g49370 | Os05g0568800 | - | Detail |
| CX5g039987 | 5:23,768,117-23,771,403 | - | C1H5g26494 | C2H5g19384 | LOC_Os05g49380 | Os05g0568900 | - | Detail |
| CX5g039827 | 5:23,773,141-23,774,532 | + | C1H5g12766 | C2H5g03690 | LOC_Os05g49400 | Os05g0569100 | - | Detail |
| CX5g040690 | 5:23,774,859-23,775,014 | - | - | C2H6g20372 | LOC_Os05g42448 | Os11g0631825 | - | Detail |
| CX5g039675 | 5:23,776,997-23,777,389 | - | - | - | - | - | - | Detail |
| CX5g037902 | 5:23,778,890-23,779,840 | + | C1H5g17667 | C2H5g19196 | LOC_Os05g49410 | Os05g0569200 | - | Detail |
| CX5g036828 | 5:23,783,109-23,788,177 | + | C1H5g15556 | C2H5g28987 | LOC_Os05g49420 | Os05g0569300 | - | Detail |
| CX5g040312 | 5:23,791,986-23,794,113 | + | C1H5g04196 | C2H5g03335 | LOC_Os05g49430 | Os05g0569400 | - | Detail |
| CX5g037007 | 5:23,794,704-23,795,512 | + | C1H5g30048 | C2H5g15224 | LOC_Os05g49440 | Os05g0569500 | - | Detail |
| CX5g037778 | 5:23,800,978-23,801,697 | + | C1H11g02939 | C2H5g09955 | LOC_Os12g36430 | - | - | Detail |
| CX5g040138 | 5:23,806,915-23,808,459 | - | C1H5g12766 | C2H5g03690 | LOC_Os05g49450 | Os05g0569100 | - | Detail |
| CX5g040294 | 5:23,809,898-23,814,811 | - | C1H5g08515 | C2H5g07371 | LOC_Os05g49520 | Os05g0569700 | - | Detail |
| CX5g037998 | 5:23,815,326-23,816,390 | - | C1H8g13722 | C2H5g10887 | LOC_Os05g49470 | Os05g0569800 | - | Detail |