| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g31867 | 1:3,355,804-3,359,143 | + | C2H1g14488 | CX1g001175 | LOC_Os01g07950 | Os01g0174900 | - | Detail |
| C1H1g24398 | 1:3,359,730-3,363,725 | - | C2H1g22647 | CX1g003986 | LOC_Os01g07960 | Os01g0175000 | - | Detail |
| C1H1g18087 | 1:3,374,875-3,380,717 | - | C2H1g30617 | CX1g004096 | LOC_Os01g07980 | Os01g0175400 | - | Detail |
| C1H1g05589 | 1:3,384,746-3,389,181 | - | C2H1g23906 | CX1g001976 | LOC_Os01g08020 | Os01g0175600 | BOR2, OsBOR2, OsBOR3 | Detail |
| C1H1g28606 | 1:3,402,750-3,407,351 | - | C2H1g04507 | CX1g006212 | LOC_Os01g08020 | Os01g0175700 | BOR2, OsBOR2, OsBOR3 | Detail |
| C1H1g24276 | 1:3,417,629-3,419,654 | + | C2H1g10547 | CX1g006769 | LOC_Os01g08090 | Os01g0176000 | - | Detail |
| C1H1g30308 | 1:3,420,696-3,422,479 | + | C2H1g11095 | CX1g003023 | LOC_Os01g08100 | Os01g0176100 | - | Detail |
| C1H1g02538 | 1:3,423,536-3,425,537 | + | C2H1g17460 | CX1g005553 | LOC_Os01g08110 | Os01g0176200 | - | Detail |
| C1H1g22640 | 1:3,432,147-3,436,739 | + | C2H1g17877 | CX1g005143 | LOC_Os01g08130 | Os01g0176400 | - | Detail |
| C1H1g06103 | 1:3,436,955-3,440,221 | - | C2H1g05536 | CX1g005306 | LOC_Os01g08150 | Os01g0176500 | - | Detail |
| C1H1g20288 | 1:3,456,019-3,456,207 | + | C2H1g25065 | CX1g006352 | LOC_Os01g08160 | Os01g0176700 | - | Detail |
| C1H1g03923 | 1:3,456,277-3,457,890 | + | C2H1g25065 | CX1g006352 | LOC_Os01g08160 | Os01g0176700 | - | Detail |
| C1H1g31422 | 1:3,465,359-3,466,757 | - | C2H1g06706 | CX1g005369 | LOC_Os01g08180 | Os01g0176900 | - | Detail |
| C1H1g14865 | 1:3,476,824-3,485,228 | + | C2H1g26258 | CX1g004627 | LOC_Os01g08190 | Os01g0177100 | - | Detail |
| C1H1g25960 | 1:3,487,096-3,495,960 | + | C2H1g16195 | CX1g003518 | LOC_Os01g08200 | Os01g0177200 | - | Detail |
| C1H1g22558 | 1:3,504,929-3,506,165 | - | C2H1g03295 | CX1g003748 | LOC_Os01g08220 | Os01g0177400 | D18, d18-h (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, GA3ox-2 | Detail |
| C1H1g04757 | 1:3,538,810-3,548,613 | - | C2H1g12398 | CX1g004229 | LOC_Os01g08260 | Os01g0177900 | - | Detail |
| C1H1g28750 | 1:3,557,094-3,562,085 | - | C2H1g19074 | CX1g004531 | LOC_Os01g08270 | Os01g0178000 | - | Detail |
| C1H1g30727 | 1:3,563,709-3,567,504 | + | C2H1g18970 | CX1g004172 | LOC_Os01g08280 | Os01g0178100 | - | Detail |
| C1H1g15139 | 1:3,568,178-3,570,121 | + | C2H1g21666 | CX1g001768 | LOC_Os01g08290 | Os01g0178200 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX5g040994 | 5:23,349,601-23,351,660 | - | C1H5g10477 | C2H5g04171 | LOC_Os05g48660 | Os05g0560300 | - | Detail |
| CX5g040506 | 5:23,354,973-23,360,604 | + | C1H5g07983 | C2H5g23278 | LOC_Os05g48670 | Os05g0560400 | - | Detail |
| CX5g041006 | 5:23,361,160-23,361,503 | - | C1H5g15622 | C2H5g11774 | LOC_Os05g48680 | Os05g0560500 | - | Detail |
| CX5g039073 | 5:23,364,818-23,365,858 | + | C1H5g18490 | C2H5g07077 | LOC_Os05g48690 | Os05g0560600 | - | Detail |
| CX5g037700 | 5:23,376,719-23,378,271 | - | C1H5g04118 | C2H5g25068 | LOC_Os05g48700 | Os05g0560900 | OsGA2ox8 | Detail |
| CX5g037256 | 5:23,397,238-23,397,465 | + | C1H5g06450 | C2H5g27839 | LOC_Os05g48740 | Os05g0561400 | - | Detail |
| CX5g036713 | 5:23,398,235-23,401,181 | - | C1H5g19616 | C2H5g17404 | LOC_Os05g48750 | Os05g0561500 | - | Detail |
| CX5g037464 | 5:23,406,111-23,409,519 | + | C1H5g06337 | C2H5g28708 | LOC_Os05g48760 | Os05g0561600 | - | Detail |
| CX5g040205 | 5:23,412,283-23,415,362 | - | C1H5g29811 | C2H5g03536 | LOC_Os05g48790 | Os05g0562000 | - | Detail |
| CX5g039207 | 5:23,416,656-23,416,805 | - | - | - | - | - | - | Detail |
| CX5g037282 | 5:23,422,193-23,424,706 | - | C1H5g21574 | C2H5g13005 | LOC_Os05g48800 | Os05g0562200 | - | Detail |
| CX5g038099 | 5:23,426,424-23,428,199 | - | C1H5g16970 | C2H5g02917 | LOC_Os05g48810 | Os05g0562300 | - | Detail |
| CX5g039085 | 5:23,429,390-23,439,834 | - | C1H5g24863 | C2H5g23462 | LOC_Os05g48820 | Os05g0562400 | - | Detail |
| CX5g039144 | 5:23,442,519-23,443,241 | - | C1H5g03290 | C2H5g25280 | LOC_Os05g48840 | Os05g0562800 | - | Detail |
| CX5g037488 | 5:23,452,363-23,453,602 | + | C1H5g26594 | C2H5g28682 | LOC_Os05g48850 | Os05g0563000 | OsSND2 | Detail |
| CX5g039932 | 5:23,454,264-23,461,176 | - | C1H5g29749 | C2H5g09501 | LOC_Os05g48855 | Os05g0563050 | - | Detail |
| CX5g037643 | 5:23,470,252-23,470,449 | + | - | - | - | - | - | Detail |
| CX5g039766 | 5:23,480,742-23,485,444 | + | C1H5g10966 | C2H5g20802 | LOC_Os05g48870 | Os05g0563400 | - | Detail |
| CX5g037148 | 5:23,486,578-23,488,965 | - | C1H5g01496 | C2H5g27189 | LOC_Os05g48880 | Os05g0563500 | OsMMS21 | Detail |
| CX5g036766 | 5:23,492,982-23,493,737 | + | C1H5g19054 | C2H5g22988 | LOC_Os05g48890 | Os05g0563550 | - | Detail |