| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g18694 | 4:28,658,302-28,658,889 | - | C2H4g14418 | CX4g032908 | LOC_Os04g55240 | Os04g0645200 | - | Detail |
| C1H4g06884 | 4:28,663,063-28,666,905 | - | C2H4g01093 | CX4g036437 | LOC_Os04g55260 | Os04g0645600 | - | Detail |
| C1H4g28592 | 4:28,673,122-28,676,448 | - | C2H4g27076 | CX4g032085 | LOC_Os04g55280 | Os04g0646050 | - | Detail |
| C1H4g12666 | 4:28,677,201-28,678,644 | - | C2H4g00324 | CX4g031654 | LOC_Os04g55290 | Os04g0646100 | - | Detail |
| C1H4g04933 | 4:28,710,655-28,711,314 | - | C2H4g28891 | CX4g032699 | LOC_Os04g55360 | Os04g0647300 | - | Detail |
| C1H4g01013 | 4:28,713,036-28,713,869 | - | C2H4g25523 | CX4g032699 | LOC_Os04g55360 | Os04g0647300 | - | Detail |
| C1H4g17955 | 4:28,734,525-28,738,568 | - | C2H4g00723 | CX4g032705 | LOC_Os04g55410 | Os04g0647800 | - | Detail |
| C1H4g25822 | 4:28,741,443-28,744,608 | + | C2H4g03628 | CX4g034505 | LOC_Os04g55420 | Os04g0647900 | - | Detail |
| C1H4g16013 | 4:28,750,055-28,750,903 | + | C2H4g20686 | CX4g034215 | LOC_Os04g55440 | Os04g0648200 | - | Detail |
| C1H4g25119 | 4:28,755,593-28,760,287 | - | C2H4g26419 | CX4g031467 | LOC_Os04g55480 | Os04g0648500 | - | Detail |
| C1H4g03048 | 4:28,765,828-28,772,012 | + | C2H4g12616 | CX4g032703 | LOC_Os04g55500 | Os04g0648700 | - | Detail |
| C1H4g02593 | 4:28,781,088-28,786,577 | + | C2H4g21483 | CX4g033088 | LOC_Os04g55510 | Os04g0648800 | - | Detail |
| C1H4g09680 | 4:28,821,780-28,824,455 | + | C2H4g14278 | CX4g036135 | LOC_Os04g55560 | Os04g0649100 | SHAT1, AP2/EREBP#043, AP2/EREBP43 | Detail |
| C1H4g00144 | 4:28,830,435-28,836,457 | + | C2H4g17474 | CX4g035239 | LOC_Os04g55570 | Os04g0649200 | - | Detail |
| C1H4g30735 | 4:28,845,828-28,846,709 | - | C2H4g02532 | CX4g032527 | LOC_Os04g55590 | Os04g0649400 | WOX4, OsWOX4, Os WOX4 | Detail |
| C1H4g22307 | 4:28,858,617-28,859,324 | + | C2H4g01325 | - | - | - | - | Detail |
| C1H4g26510 | 4:28,860,405-28,863,982 | - | C2H4g00524 | CX4g031472 | LOC_Os04g55620 | Os04g0649700 | - | Detail |
| C1H4g26377 | 4:28,867,909-28,868,871 | + | C2H4g24247 | CX4g033189 | LOC_Os04g55640 | Os04g0649900 | - | Detail |
| C1H4g19253 | 4:28,875,233-28,877,176 | + | C2H4g10875 | CX4g032778 | - | - | - | Detail |
| C1H4g30646 | 4:28,877,801-28,881,460 | - | C2H4g01573 | CX4g032034 | LOC_Os04g55650 | Os04g0650000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX5g038902 | 5:22,532,385-22,533,593 | - | C1H5g21489 | C2H5g24441 | LOC_Os05g46390 | Os05g0540600 | - | Detail |
| CX5g039412 | 5:22,537,780-22,543,362 | + | C1H5g06562 | C2H5g13798 | LOC_Os05g46395 | Os05g0541700 | - | Detail |
| CX5g039337 | 5:22,545,206-22,545,397 | - | C1H5g30366 | C2H5g16362 | - | Os05g0541750 | - | Detail |
| CX5g040694 | 5:22,547,363-22,548,237 | + | C1H5g29960 | C2H5g26824 | LOC_Os05g43240 | Os05g0541800 | - | Detail |
| CX5g039692 | 5:22,548,810-22,550,348 | - | C1H5g10948 | C2H5g22825 | LOC_Os05g46430 | Os05g0541900 | - | Detail |
| CX5g039049 | 5:22,551,298-22,554,608 | - | C1H5g24953 | C2H5g27157 | LOC_Os05g46440 | Os05g0542001 | - | Detail |
| CX5g040991 | 5:22,555,164-22,557,952 | - | C1H5g29646 | C2H5g28898 | LOC_Os05g46450 | Os05g0542100 | - | Detail |
| CX5g040398 | 5:22,560,791-22,564,059 | - | C1H5g28336 | C2H5g10686 | LOC_Os05g46460 | Os05g0542200 | - | Detail |
| CX5g039111 | 5:22,574,558-22,575,527 | + | C1H5g09305 | C2H5g20940 | LOC_Os05g46480 | Os05g0542500 | OsLEA3-1 | Detail |
| CX5g038812 | 5:22,578,229-22,582,955 | + | C1H5g16366 | C2H5g28006 | LOC_Os05g46490 | Os05g0542600 | - | Detail |
| CX5g036843 | 5:22,584,538-22,584,870 | + | C1H5g17509 | C2H5g00090 | LOC_Os05g46500 | Os05g0542732 | - | Detail |
| CX5g038839 | 5:22,587,288-22,589,802 | + | C1H5g04581 | C2H5g29209 | LOC_Os05g46510 | Os05g0542800 | - | Detail |
| CX5g037613 | 5:22,590,243-22,592,505 | + | C1H5g22788 | C2H5g29484 | LOC_Os05g46520 | Os05g0542900 | - | Detail |
| CX5g040487 | 5:22,594,659-22,595,692 | + | C1H5g21931 | C2H5g09269 | LOC_Os05g46530 | Os05g0543000 | OSIPP3 | Detail |
| CX5g038871 | 5:22,599,196-22,601,915 | - | C1H5g12205 | C2H5g29215 | LOC_Os05g46550 | Os05g0543100 | - | Detail |
| CX5g038262 | 5:22,603,091-22,605,764 | + | C1H5g11939 | C2H5g26031 | LOC_Os05g46560 | Os05g0543200 | - | Detail |
| CX5g036803 | 5:22,607,701-22,610,229 | + | C1H5g08116 | C2H5g16707 | LOC_Os05g46570 | Os05g0543300 | - | Detail |
| CX5g038659 | 5:22,611,353-22,614,411 | - | C1H5g14558 | C2H5g01982 | LOC_Os05g46580 | Os05g0543400 | - | Detail |
| CX5g038075 | 5:22,618,473-22,619,551 | + | C1H5g03603 | C2H5g04718 | LOC_Os03g57910 | Os05g0123100 | OsGT43A | Detail |
| CX5g040628 | 5:22,635,016-22,636,168 | + | C1H5g29668 | C2H5g18850 | LOC_Os05g46610 | Os05g0543600 | RLM1 | Detail |