| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g16650 | 3:31,462,462-31,467,174 | + | C1H3g00836 | CX3g029390 | LOC_Os03g60710 | Os03g0821900 | - | Detail |
| C2H3g05197 | 3:31,468,597-31,469,205 | - | C1H3g22161 | CX3g028890 | LOC_Os03g60720 | Os03g0822000 | - | Detail |
| C2H3g28970 | 3:31,470,319-31,470,807 | - | C1H3g30466 | CX3g028890 | LOC_Os03g60720 | Os03g0822000 | - | Detail |
| C2H3g26732 | 3:31,487,173-31,488,805 | - | C1H3g30684 | CX3g029250 | LOC_Os03g60740 | Os03g0822200 | - | Detail |
| C2H3g00930 | 3:31,489,652-31,491,555 | + | C1H3g07533 | CX3g030322 | LOC_Os03g60750 | Os03g0822300 | - | Detail |
| C2H3g29253 | 3:31,497,433-31,500,472 | + | C1H3g08406 | CX3g026461 | LOC_Os03g60780 | Os03g0822700 | - | Detail |
| C2H3g29318 | 3:31,500,742-31,502,311 | + | C1H3g13457 | CX3g026368 | LOC_Os03g60790 | Os03g0822800 | - | Detail |
| C2H3g15491 | 3:31,502,862-31,506,876 | + | C1H3g01506 | CX3g025072 | LOC_Os03g60800 | Os03g0822900 | - | Detail |
| C2H3g22473 | 3:31,514,830-31,519,572 | - | C1H3g06740 | CX3g027087 | LOC_Os03g60820 | Os03g0823100 | OsXTPH1 | Detail |
| C2H3g15918 | 3:31,523,675-31,524,169 | - | C1H3g24263 | CX3g030305 | LOC_Os03g60840 | Os03g0823400 | - | Detail |
| C2H3g26506 | 3:31,532,309-31,534,951 | - | C1H3g29645 | CX3g026712 | LOC_Os03g60850 | Os03g0823500 | - | Detail |
| C2H3g00093 | 3:31,555,109-31,557,705 | - | C1H3g11164 | CX3g026664 | LOC_Os03g60870 | Os03g0823700 | - | Detail |
| C2H3g02263 | 3:31,559,835-31,563,536 | - | C1H3g23866 | CX3g027221 | LOC_Os03g60880 | Os03g0823800 | - | Detail |
| C2H3g21507 | 3:31,565,794-31,567,761 | - | C1H3g01074 | CX3g030885 | LOC_Os03g60890 | Os03g0436300 | - | Detail |
| C2H3g11643 | 3:31,571,751-31,576,157 | - | C1H3g20395 | CX3g028969 | LOC_Os03g60910 | Os03g0824100 | OspTAC2 | Detail |
| C2H3g24839 | 3:31,576,475-31,578,305 | + | C1H3g15763 | CX3g029964 | LOC_Os03g60920 | Os03g0824200 | - | Detail |
| C2H3g29813 | 3:31,579,358-31,587,038 | + | C1H3g22993 | CX3g026240 | LOC_Os03g60930 | Os03g0824300 | - | Detail |
| C2H3g08790 | 3:31,587,275-31,589,732 | + | C1H3g30240 | CX3g029491 | LOC_Os03g60939 | Os03g0824400 | - | Detail |
| C2H3g23783 | 3:31,590,359-31,591,694 | - | C1H3g23681 | - | LOC_Os03g60950 | Os03g0824500 | - | Detail |
| C2H3g29419 | 3:31,593,720-31,595,221 | + | C1H3g14797 | CX3g026521 | LOC_Os03g60960 | Os03g0824600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX5g038119 | 5:22,102,754-22,103,689 | + | C1H5g03559 | C2H5g07402 | LOC_Os05g45460 | Os05g0531200 | - | Detail |
| CX5g036978 | 5:22,104,319-22,105,290 | + | C1H5g27001 | - | - | - | - | Detail |
| CX5g037192 | 5:22,110,104-22,110,998 | + | C1H5g22321 | C2H5g17651 | LOC_Os05g45480 | Os05g0531400 | - | Detail |
| CX5g038581 | 5:22,114,524-22,118,540 | + | C1H5g15758 | C2H5g11219 | LOC_Os05g45490 | Os05g0531500 | - | Detail |
| CX5g037981 | 5:22,119,233-22,120,057 | - | C1H5g28033 | C2H5g15734 | LOC_Os05g45500 | Os05g0531600 | - | Detail |
| CX5g038393 | 5:22,120,973-22,121,812 | + | C1H5g08016 | C2H5g12427 | - | Os05g0531700 | - | Detail |
| CX5g038750 | 5:22,128,404-22,131,867 | - | C1H5g04935 | C2H5g24044 | LOC_Os05g45520 | Os05g0531800 | - | Detail |
| CX5g039224 | 5:22,143,927-22,146,519 | - | C1H5g04935 | C2H5g02345 | LOC_Os05g45570 | Os05g0532300 | - | Detail |
| CX5g040316 | 5:22,149,675-22,151,906 | - | C1H5g05498 | C2H5g12338 | LOC_Os05g45580 | Os05g0532500 | - | Detail |
| CX5g038442 | 5:22,153,475-22,157,275 | - | C1H5g05803 | C2H5g06712 | LOC_Os05g45590 | Os05g0532600 | OsHXK2 | Detail |
| CX5g039722 | 5:22,158,567-22,158,824 | - | C1H5g22210 | C2H5g30367 | LOC_Os05g45610 | Os05g0532800 | - | Detail |
| CX5g037022 | 5:22,159,751-22,160,226 | + | C1H5g25723 | C2H5g14529 | - | - | - | Detail |
| CX5g038984 | 5:22,161,379-22,163,997 | + | C1H5g21932 | C2H5g24963 | LOC_Os05g45660 | Os05g0533100 | - | Detail |
| CX5g040305 | 5:22,164,573-22,166,030 | - | C1H5g22241 | C2H5g26779 | LOC_Os05g45670 | Os05g0533200 | - | Detail |
| CX5g037078 | 5:22,168,242-22,174,590 | - | C1H5g26762 | C2H5g19069 | LOC_Os05g45690 | Os05g0533400 | - | Detail |
| CX5g038315 | 5:22,177,641-22,178,672 | - | C1H5g17231 | C2H5g28299 | LOC_Os05g45710 | Os05g0533500 | OsSAT1;3 | Detail |
| CX5g039556 | 5:22,181,510-22,188,191 | + | C1H5g17232 | C2H5g13260 | LOC_Os05g45720 | Os05g0533600 | SSIVB, OsSSIVb, SSIV-2, OsSSIV-2, SSIVb, SSIV-2 | Detail |
| CX5g039089 | 5:22,189,311-22,191,369 | + | C1H5g27858 | C2H5g03217 | LOC_Os05g45730 | Os05g0533700 | - | Detail |
| CX5g038471 | 5:22,192,442-22,193,964 | + | C1H5g22620 | C2H5g09746 | LOC_Os05g45740 | Os05g0533800 | - | Detail |
| CX5g038527 | 5:22,195,248-22,198,855 | + | C1H5g12717 | C2H5g27500 | LOC_Os05g45750 | Os05g0533900 | - | Detail |