| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g19235 | 3:27,516,404-27,521,289 | - | C2H3g09804 | CX3g028000 | LOC_Os03g51250 | Os03g0722600 | - | Detail |
| C1H3g11775 | 3:27,524,762-27,526,918 | + | - | - | LOC_Os03g51260 | Os03g0722700 | - | Detail |
| C1H3g19716 | 3:27,530,964-27,538,047 | - | C2H3g01791 | CX3g028913 | LOC_Os03g51270 | Os03g0722800 | - | Detail |
| C1H3g18634 | 3:27,547,775-27,551,002 | + | C2H3g19711 | CX3g030375 | LOC_Os03g51330 | Os03g0723000 | - | Detail |
| C1H3g19621 | 3:27,554,129-27,555,117 | + | C2H3g23515 | CX3g025582 | LOC_Os03g51340 | - | - | Detail |
| C1H3g18910 | 3:27,560,158-27,561,187 | + | C2H3g08290 | CX3g030020 | LOC_Os03g51350 | Os03g0723400 | - | Detail |
| C1H3g18603 | 3:27,567,486-27,571,158 | + | C2H3g16773 | CX3g027992 | LOC_Os03g51380 | Os03g0723600 | - | Detail |
| C1H3g21377 | 3:27,584,910-27,585,263 | - | - | CX3g030004 | LOC_Os03g51420 | Os03g0724000 | - | Detail |
| C1H3g29238 | 3:27,595,306-27,596,865 | + | C2H3g11512 | CX3g025224 | LOC_Os03g51430 | Os03g0724100 | OsSec14-11 | Detail |
| C1H3g20683 | 3:27,598,455-27,602,134 | - | C2H3g26453 | CX3g028077 | LOC_Os03g51440 | Os03g0724300 | - | Detail |
| C1H3g30120 | 3:27,621,431-27,621,820 | - | C2H3g05139 | CX3g025441 | LOC_Os03g51459 | Os03g0724500 | - | Detail |
| C1H3g05968 | 3:27,624,582-27,626,556 | - | C2H3g13019 | CX3g025693 | LOC_Os03g51470 | Os03g0724600 | - | Detail |
| C1H3g04363 | 3:27,627,467-27,629,060 | + | C2H3g05753 | CX3g027196 | LOC_Os03g51479 | Os03g0724700 | - | Detail |
| C1H3g15090 | 3:27,671,660-27,671,971 | + | C2H3g12890 | CX3g028977 | LOC_Os03g51510 | Os03g0725000 | - | Detail |
| C1H3g02037 | 3:27,673,436-27,683,235 | + | C2H3g20716 | CX3g030919 | LOC_Os03g51520 | Os03g0725100 | - | Detail |
| C1H3g18345 | 3:27,684,895-27,690,679 | + | C2H3g06290 | CX3g029201 | LOC_Os03g51530 | Os03g0725200 | - | Detail |
| C1H3g09008 | 3:27,691,503-27,695,265 | + | C2H3g04142 | CX3g028312 | LOC_Os03g51550 | Os03g0725400 | - | Detail |
| C1H3g28685 | 3:27,722,430-27,724,857 | + | C2H3g06970 | CX3g029203 | LOC_Os03g51580 | Os03g0725800 | - | Detail |
| C1H3g18025 | 3:27,738,675-27,741,670 | + | C2H3g21598 | CX3g026793 | LOC_Os03g51600 | Os03g0726100 | - | Detail |
| C1H3g31013 | 3:27,748,093-27,753,800 | + | C2H3g10415 | CX3g027533 | LOC_Os03g51610 | Os03g0726200 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX5g038119 | 5:22,102,754-22,103,689 | + | C1H5g03559 | C2H5g07402 | LOC_Os05g45460 | Os05g0531200 | - | Detail |
| CX5g036978 | 5:22,104,319-22,105,290 | + | C1H5g27001 | - | - | - | - | Detail |
| CX5g037192 | 5:22,110,104-22,110,998 | + | C1H5g22321 | C2H5g17651 | LOC_Os05g45480 | Os05g0531400 | - | Detail |
| CX5g038581 | 5:22,114,524-22,118,540 | + | C1H5g15758 | C2H5g11219 | LOC_Os05g45490 | Os05g0531500 | - | Detail |
| CX5g037981 | 5:22,119,233-22,120,057 | - | C1H5g28033 | C2H5g15734 | LOC_Os05g45500 | Os05g0531600 | - | Detail |
| CX5g038393 | 5:22,120,973-22,121,812 | + | C1H5g08016 | C2H5g12427 | - | Os05g0531700 | - | Detail |
| CX5g038750 | 5:22,128,404-22,131,867 | - | C1H5g04935 | C2H5g24044 | LOC_Os05g45520 | Os05g0531800 | - | Detail |
| CX5g039224 | 5:22,143,927-22,146,519 | - | C1H5g04935 | C2H5g02345 | LOC_Os05g45570 | Os05g0532300 | - | Detail |
| CX5g040316 | 5:22,149,675-22,151,906 | - | C1H5g05498 | C2H5g12338 | LOC_Os05g45580 | Os05g0532500 | - | Detail |
| CX5g038442 | 5:22,153,475-22,157,275 | - | C1H5g05803 | C2H5g06712 | LOC_Os05g45590 | Os05g0532600 | OsHXK2 | Detail |
| CX5g039722 | 5:22,158,567-22,158,824 | - | C1H5g22210 | C2H5g30367 | LOC_Os05g45610 | Os05g0532800 | - | Detail |
| CX5g037022 | 5:22,159,751-22,160,226 | + | C1H5g25723 | C2H5g14529 | - | - | - | Detail |
| CX5g038984 | 5:22,161,379-22,163,997 | + | C1H5g21932 | C2H5g24963 | LOC_Os05g45660 | Os05g0533100 | - | Detail |
| CX5g040305 | 5:22,164,573-22,166,030 | - | C1H5g22241 | C2H5g26779 | LOC_Os05g45670 | Os05g0533200 | - | Detail |
| CX5g037078 | 5:22,168,242-22,174,590 | - | C1H5g26762 | C2H5g19069 | LOC_Os05g45690 | Os05g0533400 | - | Detail |
| CX5g038315 | 5:22,177,641-22,178,672 | - | C1H5g17231 | C2H5g28299 | LOC_Os05g45710 | Os05g0533500 | OsSAT1;3 | Detail |
| CX5g039556 | 5:22,181,510-22,188,191 | + | C1H5g17232 | C2H5g13260 | LOC_Os05g45720 | Os05g0533600 | SSIVB, OsSSIVb, SSIV-2, OsSSIV-2, SSIVb, SSIV-2 | Detail |
| CX5g039089 | 5:22,189,311-22,191,369 | + | C1H5g27858 | C2H5g03217 | LOC_Os05g45730 | Os05g0533700 | - | Detail |
| CX5g038471 | 5:22,192,442-22,193,964 | + | C1H5g22620 | C2H5g09746 | LOC_Os05g45740 | Os05g0533800 | - | Detail |
| CX5g038527 | 5:22,195,248-22,198,855 | + | C1H5g12717 | C2H5g27500 | LOC_Os05g45750 | Os05g0533900 | - | Detail |