| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g28547 | 3:15,436,272-15,439,215 | + | C1H3g13446 | CX3g026824 | LOC_Os03g29810 | Os03g0411500 | VYL, OsClpP6, ClpP6, CLP6 | Detail |
| C2H3g05086 | 3:15,440,249-15,442,326 | + | C1H3g17384 | CX3g028485 | LOC_Os03g29830 | Os03g0411600 | - | Detail |
| C2H3g03300 | 3:15,450,268-15,454,284 | - | C1H3g16278 | CX3g026254 | LOC_Os03g29850 | Os03g0411800 | - | Detail |
| C2H3g18598 | 3:15,489,023-15,493,295 | + | C1H3g01152 | CX3g025249 | LOC_Os03g29910 | Os03g0412200 | - | Detail |
| C2H3g25598 | 3:15,499,711-15,500,582 | + | C1H3g29513 | CX3g027118 | LOC_Os03g29920 | Os03g0412300 | - | Detail |
| C2H3g13302 | 3:15,505,473-15,506,357 | - | C1H3g14020 | CX3g026464 | LOC_Os03g29930 | Os03g0412400 | - | Detail |
| C2H3g28011 | 3:15,524,973-15,528,682 | + | C1H3g23937 | CX3g026817 | LOC_Os03g29950 | Os03g0412800 | - | Detail |
| C2H3g06222 | 3:15,533,828-15,540,505 | + | C1H3g13193 | CX3g030482 | LOC_Os03g29960 | Os03g0412900 | - | Detail |
| C2H3g21811 | 3:15,552,691-15,556,814 | + | C1H3g10486 | CX3g029713 | LOC_Os03g29980 | Os03g0413100 | - | Detail |
| C2H3g29744 | 3:15,564,931-15,569,605 | - | C1H3g17935 | CX3g028183 | LOC_Os03g30000 | Os03g0413400 | - | Detail |
| C2H3g28598 | 3:15,615,334-15,615,990 | - | - | - | LOC_Os02g45270 | Os02g0675000 | - | Detail |
| C2H3g13977 | 3:15,640,906-15,641,697 | + | C1H3g09941 | CX3g026035 | LOC_Os03g30120 | Os03g0414900 | - | Detail |
| C2H3g10779 | 3:15,650,778-15,653,866 | - | C1H3g17098 | CX3g031360 | LOC_Os03g30130 | Os03g0415200 | - | Detail |
| C2H3g22648 | 3:15,664,371-15,665,867 | + | C1H3g19128 | CX3g028346 | LOC_Os03g30220 | Os03g0415700 | - | Detail |
| C2H3g10116 | 3:15,676,497-15,678,440 | + | C1H3g25355 | CX3g025881 | LOC_Os03g30250 | Os03g0416200 | - | Detail |
| C2H3g04729 | 3:15,680,781-15,684,112 | - | C1H3g20080 | CX3g027193 | LOC_Os03g30260 | Os03g0416300 | OsBC1L2 | Detail |
| C2H3g26266 | 3:15,696,247-15,700,651 | - | C1H3g12535 | CX3g030769 | LOC_Os03g30300 | Os03g0416500 | - | Detail |
| C2H3g09323 | 3:15,726,493-15,729,007 | + | C1H3g18690 | CX3g029905 | LOC_Os03g28270 | - | - | Detail |
| C2H3g21176 | 3:15,729,847-15,732,340 | + | C1H3g18690 | CX3g029905 | LOC_Os03g28270 | - | - | Detail |
| C2H3g26870 | 3:15,753,249-15,754,898 | - | C1H3g24441 | CX3g026161 | LOC_Os03g30420 | Os03g0417700 | GL3.2 | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX5g040089 | 5:21,997,430-22,000,048 | - | C1H5g08207 | C2H5g20737 | LOC_Os05g45240 | Os05g0528600 | YUCCA2, OsYUCCA2, OsYUC2 | Detail |
| CX5g037129 | 5:22,012,325-22,014,795 | + | C1H5g01627 | C2H5g24380 | LOC_Os05g45270 | Os05g0528900 | - | Detail |
| CX5g037006 | 5:22,015,601-22,018,667 | - | C1H5g10151 | C2H5g24809 | LOC_Os05g45280 | Os05g0529000 | OsCOLE1 | Detail |
| CX5g037310 | 5:22,021,876-22,022,604 | - | C1H5g28513 | C2H5g17684 | LOC_Os05g45300 | Os05g0529200 | - | Detail |
| CX5g038523 | 5:22,023,854-22,026,173 | - | C1H5g24048 | C2H5g19780 | LOC_Os05g45310 | Os05g0529300 | - | Detail |
| CX5g039119 | 5:22,026,831-22,028,762 | + | C1H5g11025 | C2H5g25402 | LOC_Os05g45320 | Os05g0529400 | - | Detail |
| CX5g036791 | 5:22,037,314-22,042,436 | + | C1H5g31384 | C2H5g16121 | LOC_Os05g45340 | Os05g0529600 | - | Detail |
| CX5g038291 | 5:22,049,284-22,051,756 | - | C1H5g03075 | C2H5g16704 | LOC_Os05g45350 | Os05g0529700 | - | Detail |
| CX5g039702 | 5:22,054,994-22,058,152 | - | C1H5g03402 | C2H5g05411 | LOC_Os05g45370 | Os05g0529900 | - | Detail |
| CX5g038212 | 5:22,063,733-22,066,681 | - | C1H5g16768 | C2H5g30642 | LOC_Os05g45400 | Os05g0530300 | - | Detail |
| CX5g039260 | 5:22,073,276-22,074,890 | + | C1H5g10593 | C2H5g07629 | LOC_Os05g45410 | Os05g0530400 | OsSPL7, SPL7, HSFA-4d | Detail |
| CX5g040944 | 5:22,075,777-22,079,146 | - | C1H5g11637 | C2H5g03685 | LOC_Os05g45420 | Os05g0530500 | - | Detail |
| CX5g038767 | 5:22,081,329-22,081,826 | + | - | C2H5g04972 | - | - | - | Detail |
| CX5g039621 | 5:22,082,087-22,082,386 | + | - | - | - | - | - | Detail |
| CX5g039408 | 5:22,086,192-22,087,616 | - | C1H5g15948 | C2H5g21081 | LOC_Os05g45430 | Os05g0530701 | - | Detail |
| CX5g038532 | 5:22,087,946-22,088,119 | + | - | - | - | Os02g0188201 | - | Detail |
| CX5g037145 | 5:22,093,152-22,093,454 | - | C1H5g05296 | C2H5g17893 | - | Os07g0631500 | - | Detail |
| CX5g038339 | 5:22,093,564-22,094,535 | + | - | - | - | - | - | Detail |
| CX5g036906 | 5:22,097,800-22,098,228 | + | C1H5g24612 | C2H5g28427 | LOC_Os05g45440 | Os05g0531000 | OsS40-14 | Detail |
| CX5g038460 | 5:22,099,616-22,100,059 | + | C1H5g13864 | C2H5g25354 | LOC_Os05g45450 | Os05g0531100 | OsS40-1 | Detail |