| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g13446 | 3:15,441,855-15,444,790 | + | C2H3g28547 | CX3g026824 | LOC_Os03g29810 | Os03g0411500 | VYL, OsClpP6, ClpP6, CLP6 | Detail |
| C1H3g17384 | 3:15,446,063-15,447,888 | + | C2H3g05086 | CX3g028485 | LOC_Os03g29830 | Os03g0411600 | - | Detail |
| C1H3g16278 | 3:15,454,788-15,458,812 | - | C2H3g03300 | CX3g026254 | LOC_Os03g29850 | Os03g0411800 | - | Detail |
| C1H3g01152 | 3:15,493,558-15,497,840 | + | C2H3g18598 | CX3g025249 | LOC_Os03g29910 | Os03g0412200 | - | Detail |
| C1H3g29513 | 3:15,504,089-15,505,016 | + | C2H3g25598 | CX3g027118 | LOC_Os03g29920 | Os03g0412300 | - | Detail |
| C1H3g14020 | 3:15,509,912-15,510,796 | - | C2H3g13302 | CX3g026464 | LOC_Os03g29930 | Os03g0412400 | - | Detail |
| C1H3g23937 | 3:15,529,629-15,536,720 | + | C2H3g28011 | CX3g026817 | LOC_Os03g29950 | Os03g0412800 | - | Detail |
| C1H3g13193 | 3:15,550,436-15,557,135 | + | C2H3g06222 | CX3g030482 | LOC_Os03g29960 | Os03g0412900 | - | Detail |
| C1H3g10486 | 3:15,568,207-15,572,329 | + | C2H3g21811 | CX3g029713 | LOC_Os03g29980 | Os03g0413100 | - | Detail |
| C1H3g17935 | 3:15,580,436-15,586,269 | - | C2H3g29744 | CX3g028183 | LOC_Os03g30000 | Os03g0413400 | - | Detail |
| C1H3g29820 | 3:15,619,439-15,620,660 | + | - | - | - | Os03g0414200 | - | Detail |
| C1H3g00999 | 3:15,637,124-15,638,153 | - | - | CX3g027342 | LOC_Os03g30092 | Os03g0414400 | OsHCF222 | Detail |
| C1H3g09941 | 3:15,669,135-15,669,926 | + | C2H3g13977 | CX3g026035 | LOC_Os03g30120 | Os03g0414900 | - | Detail |
| C1H3g17098 | 3:15,678,936-15,682,018 | - | C2H3g10779 | CX3g031360 | LOC_Os03g30130 | Os03g0415200 | - | Detail |
| C1H3g25399 | 3:15,692,516-15,692,890 | + | C2H3g22648 | - | - | - | - | Detail |
| C1H3g19128 | 3:15,693,759-15,694,121 | + | C2H3g22648 | CX3g028346 | LOC_Os03g30220 | Os03g0415600 | - | Detail |
| C1H3g23999 | 3:15,694,401-15,695,009 | + | C2H3g22648 | CX3g028346 | LOC_Os03g30220 | Os03g0415700 | - | Detail |
| C1H3g25355 | 3:15,705,622-15,707,536 | + | C2H3g10116 | CX3g025881 | LOC_Os03g30250 | Os03g0416200 | - | Detail |
| C1H3g20080 | 3:15,707,813-15,711,121 | - | C2H3g04729 | CX3g027193 | LOC_Os03g30260 | Os03g0416300 | OsBC1L2 | Detail |
| C1H3g12535 | 3:15,723,016-15,727,423 | - | C2H3g26266 | CX3g030769 | LOC_Os03g30300 | Os03g0416500 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX5g040089 | 5:21,997,430-22,000,048 | - | C1H5g08207 | C2H5g20737 | LOC_Os05g45240 | Os05g0528600 | YUCCA2, OsYUCCA2, OsYUC2 | Detail |
| CX5g037129 | 5:22,012,325-22,014,795 | + | C1H5g01627 | C2H5g24380 | LOC_Os05g45270 | Os05g0528900 | - | Detail |
| CX5g037006 | 5:22,015,601-22,018,667 | - | C1H5g10151 | C2H5g24809 | LOC_Os05g45280 | Os05g0529000 | OsCOLE1 | Detail |
| CX5g037310 | 5:22,021,876-22,022,604 | - | C1H5g28513 | C2H5g17684 | LOC_Os05g45300 | Os05g0529200 | - | Detail |
| CX5g038523 | 5:22,023,854-22,026,173 | - | C1H5g24048 | C2H5g19780 | LOC_Os05g45310 | Os05g0529300 | - | Detail |
| CX5g039119 | 5:22,026,831-22,028,762 | + | C1H5g11025 | C2H5g25402 | LOC_Os05g45320 | Os05g0529400 | - | Detail |
| CX5g036791 | 5:22,037,314-22,042,436 | + | C1H5g31384 | C2H5g16121 | LOC_Os05g45340 | Os05g0529600 | - | Detail |
| CX5g038291 | 5:22,049,284-22,051,756 | - | C1H5g03075 | C2H5g16704 | LOC_Os05g45350 | Os05g0529700 | - | Detail |
| CX5g039702 | 5:22,054,994-22,058,152 | - | C1H5g03402 | C2H5g05411 | LOC_Os05g45370 | Os05g0529900 | - | Detail |
| CX5g038212 | 5:22,063,733-22,066,681 | - | C1H5g16768 | C2H5g30642 | LOC_Os05g45400 | Os05g0530300 | - | Detail |
| CX5g039260 | 5:22,073,276-22,074,890 | + | C1H5g10593 | C2H5g07629 | LOC_Os05g45410 | Os05g0530400 | OsSPL7, SPL7, HSFA-4d | Detail |
| CX5g040944 | 5:22,075,777-22,079,146 | - | C1H5g11637 | C2H5g03685 | LOC_Os05g45420 | Os05g0530500 | - | Detail |
| CX5g038767 | 5:22,081,329-22,081,826 | + | - | C2H5g04972 | - | - | - | Detail |
| CX5g039621 | 5:22,082,087-22,082,386 | + | - | - | - | - | - | Detail |
| CX5g039408 | 5:22,086,192-22,087,616 | - | C1H5g15948 | C2H5g21081 | LOC_Os05g45430 | Os05g0530701 | - | Detail |
| CX5g038532 | 5:22,087,946-22,088,119 | + | - | - | - | Os02g0188201 | - | Detail |
| CX5g037145 | 5:22,093,152-22,093,454 | - | C1H5g05296 | C2H5g17893 | - | Os07g0631500 | - | Detail |
| CX5g038339 | 5:22,093,564-22,094,535 | + | - | - | - | - | - | Detail |
| CX5g036906 | 5:22,097,800-22,098,228 | + | C1H5g24612 | C2H5g28427 | LOC_Os05g45440 | Os05g0531000 | OsS40-14 | Detail |
| CX5g038460 | 5:22,099,616-22,100,059 | + | C1H5g13864 | C2H5g25354 | LOC_Os05g45450 | Os05g0531100 | OsS40-1 | Detail |