| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g02008 | 3:26,182,013-26,183,143 | - | C1H3g04028 | CX3g026061 | LOC_Os03g50110 | Os03g0708800 | - | Detail |
| C2H3g01107 | 3:26,185,381-26,189,613 | + | C1H3g25650 | CX3g026724 | LOC_Os03g50120 | Os03g0708900 | - | Detail |
| C2H3g12581 | 3:26,191,414-26,193,120 | - | C1H3g26419 | CX3g026549 | - | Os03g0709000 | - | Detail |
| C2H3g23367 | 3:26,194,969-26,195,175 | - | C1H3g00554 | CX3g030849 | LOC_Os03g50140 | Os03g0709100 | OsUCL8 | Detail |
| C2H3g12217 | 3:26,195,267-26,195,473 | - | C1H3g08833 | CX3g030849 | LOC_Os03g50140 | Os03g0709100 | OsUCL8 | Detail |
| C2H3g17990 | 3:26,201,153-26,203,099 | - | C1H3g00862 | CX3g027687 | LOC_Os03g50160 | Os03g0709300 | - | Detail |
| C2H3g00532 | 3:26,209,333-26,211,854 | - | C1H12g23110 | - | - | - | - | Detail |
| C2H3g22762 | 3:26,225,661-26,226,970 | + | C1H3g26800 | CX3g031286 | LOC_Os03g50210 | Os03g0710000 | - | Detail |
| C2H3g19621 | 3:26,227,851-26,230,459 | - | C1H3g31046 | CX3g026541 | LOC_Os03g50220 | - | - | Detail |
| C2H3g18554 | 3:26,231,717-26,234,922 | - | C1H3g04126 | CX3g026477 | LOC_Os03g50230 | Os03g0710100 | OsHOP2 | Detail |
| C2H3g09223 | 3:26,235,915-26,237,007 | - | C1H3g07148 | CX3g026477 | LOC_Os03g50230 | Os03g0710100 | OsHOP2 | Detail |
| C2H3g20376 | 3:26,239,365-26,242,346 | + | C1H3g05875 | CX3g028078 | LOC_Os03g50250 | Os03g0710500 | - | Detail |
| C2H3g06541 | 3:26,246,057-26,247,590 | - | C1H3g17966 | CX3g029323 | LOC_Os03g50270 | Os03g0710600 | - | Detail |
| C2H3g00310 | 3:26,250,143-26,251,759 | - | C1H3g12018 | CX3g027946 | LOC_Os03g50280 | Os03g0710700 | - | Detail |
| C2H3g13816 | 3:26,259,380-26,263,162 | + | C1H3g30860 | CX3g029821 | LOC_Os03g50290 | Os03g0710800 | GF14f, SR14-3-3 | Detail |
| C2H3g13830 | 3:26,265,796-26,273,924 | + | C1H3g01378 | CX3g029660 | LOC_Os03g50300 | Os03g0710900 | - | Detail |
| C2H3g07676 | 3:26,279,870-26,282,288 | + | C1H3g31233 | CX3g028553 | LOC_Os03g50310 | Os03g0711100 | OsCOL10, OsBBX10, OsJ, OsCCT14 | Detail |
| C2H3g02097 | 3:26,282,644-26,297,961 | - | C1H3g26509 | CX3g031158 | LOC_Os03g50320 | Os03g0711200 | - | Detail |
| C2H3g27257 | 3:26,299,995-26,307,777 | - | C1H3g08523 | CX3g026863 | LOC_Os03g50330 | Os03g0711300 | - | Detail |
| C2H3g20089 | 3:26,309,999-26,315,252 | - | C1H3g29848 | CX3g028922 | LOC_Os03g50340 | Os03g0711400 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX5g038171 | 5:21,454,472-21,455,800 | + | C1H5g21636 | C2H5g27679 | LOC_Os05g43930 | Os05g0515500 | OsASMT3 | Detail |
| CX5g038512 | 5:21,467,455-21,468,889 | - | C1H5g21636 | C2H5g07980 | LOC_Os05g43930 | Os05g0515600 | OsCOMT9 | Detail |
| CX5g037498 | 5:21,473,661-21,477,364 | + | C1H5g00839 | C2H5g04015 | LOC_Os05g43950 | Os05g0515700 | OsVOZ2 | Detail |
| CX5g039793 | 5:21,478,119-21,479,792 | - | C1H5g13776 | C2H5g16276 | LOC_Os05g43960 | Os05g0415400 | OsNAC24 | Detail |
| CX5g038707 | 5:21,480,156-21,484,018 | + | C1H5g03749 | C2H5g17758 | LOC_Os05g43970 | Os05g0515900 | - | Detail |
| CX5g039772 | 5:21,487,430-21,487,789 | - | C1H5g20589 | C2H5g19371 | - | Os05g0516100 | - | Detail |
| CX5g039979 | 5:21,491,614-21,493,740 | + | C1H5g26916 | C2H5g04233 | LOC_Os05g44020 | Os05g0516300 | - | Detail |
| CX5g039876 | 5:21,496,435-21,497,529 | - | C1H5g24467 | C2H5g15773 | - | Os05g0516475 | - | Detail |
| CX5g039691 | 5:21,498,371-21,498,820 | - | - | - | - | - | - | Detail |
| CX5g038417 | 5:21,499,179-21,501,366 | + | C1H5g19283 | C2H5g13797 | LOC_Os05g44030 | Os05g0516400 | - | Detail |
| CX5g039493 | 5:21,503,490-21,505,871 | + | C1H5g14981 | C2H5g04641 | LOC_Os05g44050 | Os05g0516600 | OsRab7, OsRab7B3 | Detail |
| CX5g041146 | 5:21,507,096-21,507,623 | + | C1H5g10610 | C2H5g05743 | LOC_Os05g44060 | Os05g0516700 | - | Detail |
| CX5g039048 | 5:21,508,363-21,510,095 | - | C1H5g21266 | C2H5g24588 | LOC_Os05g44070 | Os05g0516800 | - | Detail |
| CX5g039615 | 5:21,513,259-21,517,574 | + | C1H5g05035 | C2H5g20039 | LOC_Os05g44080 | Os05g0516900 | OsMac3 | Detail |
| CX5g038718 | 5:21,519,103-21,520,047 | - | C1H5g21400 | C2H5g04869 | LOC_Os05g44090 | Os05g0517100 | - | Detail |
| CX5g040866 | 5:21,523,468-21,523,635 | + | - | - | - | - | - | Detail |
| CX5g040204 | 5:21,525,510-21,529,481 | + | C1H5g00428 | C2H5g18358 | LOC_Os05g44100 | Os05g0517200 | - | Detail |
| CX5g037887 | 5:21,533,261-21,533,623 | + | C1H5g00439 | C2H5g21345 | LOC_Os05g44120 | Os05g0517400 | - | Detail |
| CX5g040072 | 5:21,536,092-21,540,279 | - | C1H5g15240 | C2H5g27310 | LOC_Os05g44130 | Os05g0517500 | - | Detail |
| CX5g039695 | 5:21,541,447-21,544,729 | - | C1H5g27527 | C2H5g03251 | LOC_Os05g44140 | Os05g0517600 | Hb5 | Detail |