| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g17802 | 3:23,008,739-23,012,439 | + | C2H3g26963 | CX3g027391 | LOC_Os03g43670 | Os03g0637800 | OsCR4, MIS2 | Detail |
| C1H3g08726 | 3:23,017,635-23,026,652 | - | C2H3g21555 | CX3g029790 | LOC_Os03g43684 | Os03g0638000 | - | Detail |
| C1H3g11114 | 3:23,044,882-23,049,405 | + | C2H3g25520 | CX3g028463 | LOC_Os03g43720 | Os03g0638200 | - | Detail |
| C1H3g15945 | 3:23,051,002-23,058,423 | - | C2H3g16047 | CX3g029266 | LOC_Os03g43730 | Os03g0638300 | - | Detail |
| C1H3g27096 | 3:23,068,740-23,073,679 | + | C2H3g25175 | CX3g026087 | LOC_Os03g43760 | Os03g0638800 | - | Detail |
| C1H3g11228 | 3:23,109,368-23,125,685 | + | C2H3g20789 | CX3g027536 | LOC_Os03g43800 | - | - | Detail |
| C1H3g08955 | 3:23,136,890-23,137,938 | + | C2H3g02886 | CX3g030991 | LOC_Os03g43810 | Os03g0639300 | OsBP5 | Detail |
| C1H3g23874 | 3:23,138,323-23,139,044 | + | C2H3g02886 | CX3g030991 | LOC_Os03g43810 | Os03g0782500 | PIL13, OsPIL1, OsPIL13, OsbHLH152 | Detail |
| C1H3g03720 | 3:23,224,460-23,228,334 | - | C2H3g22381 | CX3g029268 | LOC_Os03g43840 | Os03g0639600 | - | Detail |
| C1H3g07222 | 3:23,232,911-23,237,552 | + | C2H3g06362 | CX3g025724 | LOC_Os03g43850 | Os03g0639700 | - | Detail |
| C1H3g11773 | 3:23,237,853-23,241,042 | - | C2H3g24990 | CX3g027146 | LOC_Os03g43860 | Os03g0639800 | OsVPS2 | Detail |
| C1H3g13764 | 3:23,270,774-23,278,329 | - | C2H3g01125 | CX3g026102 | LOC_Os03g43890 | Os03g0640100 | OsMSI1 | Detail |
| C1H3g15764 | 3:23,279,567-23,279,926 | - | C2H3g20329 | - | LOC_Os03g43910 | Os03g0640400 | LO9-177 | Detail |
| C1H3g09832 | 3:23,283,146-23,284,835 | - | C2H3g06880 | CX3g025959 | LOC_Os03g43900 | Os03g0640300 | - | Detail |
| C1H3g02135 | 3:23,288,535-23,291,333 | - | C2H3g28747 | - | LOC_Os03g43910 | Os03g0640400 | LO9-177 | Detail |
| C1H3g29126 | 3:23,299,509-23,305,320 | - | C2H3g10248 | CX3g025023 | LOC_Os03g43930 | Os03g0640800 | - | Detail |
| C1H3g01593 | 3:23,340,240-23,345,639 | - | C2H3g24666 | CX3g029177 | LOC_Os03g43970 | Os03g0641200 | - | Detail |
| C1H3g28158 | 3:23,350,428-23,355,402 | - | C2H3g08449 | CX3g025757 | LOC_Os03g43990 | Os03g0767600 | - | Detail |
| C1H3g19477 | 3:23,366,411-23,368,627 | + | C2H3g00183 | CX3g030013 | LOC_Os03g44000 | Os03g0641500 | - | Detail |
| C1H3g24950 | 3:23,372,807-23,375,538 | + | C2H3g23644 | CX3g028634 | LOC_Os03g44010 | Os03g0641700 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX5g038171 | 5:21,454,472-21,455,800 | + | C1H5g21636 | C2H5g27679 | LOC_Os05g43930 | Os05g0515500 | OsASMT3 | Detail |
| CX5g038512 | 5:21,467,455-21,468,889 | - | C1H5g21636 | C2H5g07980 | LOC_Os05g43930 | Os05g0515600 | OsCOMT9 | Detail |
| CX5g037498 | 5:21,473,661-21,477,364 | + | C1H5g00839 | C2H5g04015 | LOC_Os05g43950 | Os05g0515700 | OsVOZ2 | Detail |
| CX5g039793 | 5:21,478,119-21,479,792 | - | C1H5g13776 | C2H5g16276 | LOC_Os05g43960 | Os05g0415400 | OsNAC24 | Detail |
| CX5g038707 | 5:21,480,156-21,484,018 | + | C1H5g03749 | C2H5g17758 | LOC_Os05g43970 | Os05g0515900 | - | Detail |
| CX5g039772 | 5:21,487,430-21,487,789 | - | C1H5g20589 | C2H5g19371 | - | Os05g0516100 | - | Detail |
| CX5g039979 | 5:21,491,614-21,493,740 | + | C1H5g26916 | C2H5g04233 | LOC_Os05g44020 | Os05g0516300 | - | Detail |
| CX5g039876 | 5:21,496,435-21,497,529 | - | C1H5g24467 | C2H5g15773 | - | Os05g0516475 | - | Detail |
| CX5g039691 | 5:21,498,371-21,498,820 | - | - | - | - | - | - | Detail |
| CX5g038417 | 5:21,499,179-21,501,366 | + | C1H5g19283 | C2H5g13797 | LOC_Os05g44030 | Os05g0516400 | - | Detail |
| CX5g039493 | 5:21,503,490-21,505,871 | + | C1H5g14981 | C2H5g04641 | LOC_Os05g44050 | Os05g0516600 | OsRab7, OsRab7B3 | Detail |
| CX5g041146 | 5:21,507,096-21,507,623 | + | C1H5g10610 | C2H5g05743 | LOC_Os05g44060 | Os05g0516700 | - | Detail |
| CX5g039048 | 5:21,508,363-21,510,095 | - | C1H5g21266 | C2H5g24588 | LOC_Os05g44070 | Os05g0516800 | - | Detail |
| CX5g039615 | 5:21,513,259-21,517,574 | + | C1H5g05035 | C2H5g20039 | LOC_Os05g44080 | Os05g0516900 | OsMac3 | Detail |
| CX5g038718 | 5:21,519,103-21,520,047 | - | C1H5g21400 | C2H5g04869 | LOC_Os05g44090 | Os05g0517100 | - | Detail |
| CX5g040866 | 5:21,523,468-21,523,635 | + | - | - | - | - | - | Detail |
| CX5g040204 | 5:21,525,510-21,529,481 | + | C1H5g00428 | C2H5g18358 | LOC_Os05g44100 | Os05g0517200 | - | Detail |
| CX5g037887 | 5:21,533,261-21,533,623 | + | C1H5g00439 | C2H5g21345 | LOC_Os05g44120 | Os05g0517400 | - | Detail |
| CX5g040072 | 5:21,536,092-21,540,279 | - | C1H5g15240 | C2H5g27310 | LOC_Os05g44130 | Os05g0517500 | - | Detail |
| CX5g039695 | 5:21,541,447-21,544,729 | - | C1H5g27527 | C2H5g03251 | LOC_Os05g44140 | Os05g0517600 | Hb5 | Detail |