| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H5g15328 | 5:13,245,215-13,246,649 | + | C1H5g07750 | CX5g039225 | LOC_Os05g27340 | Os05g0339200 | - | Detail |
| C2H5g14220 | 5:13,282,150-13,285,062 | + | C1H5g05577 | CX5g036883 | LOC_Os05g27500 | Os05g0341100 | - | Detail |
| C2H5g02870 | 5:13,299,797-13,304,709 | - | C1H5g03022 | CX5g040935 | LOC_Os05g26890 | Os05g0333200 | D1, RGA1 | Detail |
| C2H5g16957 | 5:13,312,045-13,314,888 | - | - | - | - | - | - | Detail |
| C2H5g07220 | 5:13,315,571-13,316,116 | - | - | CX5g039361 | - | - | - | Detail |
| C2H5g23486 | 5:13,318,027-13,322,181 | - | C1H5g06416 | CX5g038002 | LOC_Os05g27530 | Os05g0341600 | - | Detail |
| C2H5g01175 | 5:13,338,234-13,341,924 | - | C1H5g16606 | CX5g037918 | LOC_Os05g27580 | Os05g0342000 | - | Detail |
| C2H5g27836 | 5:13,367,425-13,371,031 | + | C1H5g14668 | CX5g037297 | LOC_Os05g27660 | Os05g0342900 | - | Detail |
| C2H5g28661 | 5:13,397,426-13,399,285 | + | C1H5g15039 | CX5g040774 | LOC_Os05g27730 | Os05g0343400 | WRKY53, OsWRKY53 | Detail |
| C2H5g16881 | 5:13,402,969-13,404,011 | - | C1H5g04216 | CX5g038974 | LOC_Os05g27740 | - | - | Detail |
| C2H5g15026 | 5:13,412,762-13,414,025 | + | C1H5g25967 | - | - | - | - | Detail |
| C2H5g02617 | 5:13,433,767-13,439,055 | + | C1H5g00690 | CX5g039180 | LOC_Os05g28090 | Os05g0348100 | OsNdhl | Detail |
| C2H5g26312 | 5:13,440,416-13,440,905 | - | C1H5g23669 | CX5g039491 | - | Os05g0588300 | - | Detail |
| C2H5g18593 | 5:13,472,752-13,473,606 | + | C1H5g19699 | CX5g039840 | LOC_Os05g28040 | Os05g0347400 | OsG1L9 | Detail |
| C2H5g24655 | 5:13,486,633-13,489,312 | + | C1H5g17201 | CX5g038657 | LOC_Os05g28010 | Os05g0347000 | - | Detail |
| C2H5g25283 | 5:13,509,667-13,510,360 | + | C1H5g26235 | CX5g041112 | LOC_Os05g27980 | Os05g0346800 | - | Detail |
| C2H5g25338 | 5:13,514,389-13,521,143 | + | C1H5g30238 | CX5g037334 | LOC_Os05g27960 | Os05g0346500 | Endo-Os | Detail |
| C2H5g21564 | 5:13,521,830-13,528,684 | - | C1H5g26042 | CX5g037807 | LOC_Os05g27950 | Os05g0346400 | - | Detail |
| C2H5g17547 | 5:13,528,839-13,531,813 | + | C1H5g02425 | CX5g037658 | LOC_Os05g27940 | Os05g0346300 | - | Detail |
| C2H5g29783 | 5:13,534,126-13,537,414 | + | C1H5g00367 | CX5g041046 | LOC_Os05g27930 | Os05g0346200 | OsDREB2B | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX5g040726 | 5:21,302,802-21,304,121 | - | C1H5g20040 | C2H5g13083 | LOC_Os05g43670 | Os05g0512400 | - | Detail |
| CX5g037888 | 5:21,311,886-21,313,393 | + | C1H5g08173 | C2H5g03611 | LOC_Os05g43690 | Os05g0512600 | - | Detail |
| CX5g039008 | 5:21,328,343-21,330,447 | + | C1H5g02984 | C2H5g16900 | LOC_Os05g43760 | Os05g0513100 | - | Detail |
| CX5g040071 | 5:21,338,940-21,343,047 | + | C1H5g10552 | C2H5g24258 | LOC_Os05g43770 | Os05g0513200 | - | Detail |
| CX5g039684 | 5:21,346,303-21,349,184 | + | C1H5g13302 | C2H5g09149 | LOC_Os05g43780 | Os05g0513350 | - | Detail |
| CX5g038930 | 5:21,350,805-21,353,721 | + | C1H5g09663 | C2H5g26918 | LOC_Os05g43790 | Os05g0513400 | - | Detail |
| CX5g036821 | 5:21,358,323-21,359,690 | - | C1H5g15162 | C2H5g05557 | LOC_Os05g43800 | Os05g0513600 | - | Detail |
| CX5g036949 | 5:21,360,225-21,362,703 | - | C1H5g20443 | C2H5g13727 | LOC_Os05g43810 | Os05g0513700 | - | Detail |
| CX5g036780 | 5:21,366,503-21,368,269 | + | C1H5g18479 | C2H5g12600 | LOC_Os05g43820 | Os05g0513800 | - | Detail |
| CX5g040516 | 5:21,368,849-21,372,374 | - | C1H5g21593 | C2H5g13306 | LOC_Os05g43830 | Os05g0513900 | - | Detail |
| CX5g039381 | 5:21,376,869-21,378,404 | + | C1H5g29251 | C2H5g05539 | LOC_Os05g43840 | Os05g0514200 | - | Detail |
| CX5g039707 | 5:21,384,699-21,388,930 | + | C1H5g31291 | C2H5g17185 | LOC_Os05g43850 | Os05g0514300 | - | Detail |
| CX5g039655 | 5:21,391,866-21,393,483 | - | C1H5g31864 | C2H5g21883 | LOC_Os05g43860 | Os05g0514400 | - | Detail |
| CX5g039558 | 5:21,396,311-21,398,456 | + | C1H5g13883 | C2H5g27546 | LOC_Os05g43870 | Os05g0514500 | - | Detail |
| CX5g037140 | 5:21,403,569-21,404,723 | - | C1H5g27703 | C2H5g19387 | LOC_Os05g43880 | Os05g0514600 | GA2OX4, OsGA2ox4, ga2ox 4, OsGA2ox-4 | Detail |
| CX5g039348 | 5:21,417,510-21,417,755 | + | C1H5g12361 | C2H5g15452 | LOC_Os05g43895 | Os05g0514800 | - | Detail |
| CX5g037133 | 5:21,420,006-21,420,212 | + | - | - | - | - | - | Detail |
| CX5g037839 | 5:21,427,472-21,428,467 | + | C1H5g18846 | C2H5g22372 | LOC_Os05g43910 | Os05g0515200 | - | Detail |
| CX5g037416 | 5:21,435,417-21,436,061 | + | C1H5g18846 | C2H5g22372 | LOC_Os05g43910 | Os05g0515200 | - | Detail |
| CX5g037729 | 5:21,445,071-21,450,289 | + | C1H5g31857 | C2H5g05053 | LOC_Os05g43920 | Os05g0515400 | OsARF14, OsARF3la, OsARF3la/OsARF14 | Detail |