| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g16688 | 3:13,859,585-13,860,173 | + | - | - | - | - | - | Detail |
| C1H3g00426 | 3:13,862,049-13,864,352 | + | C2H3g15032 | CX3g025602 | LOC_Os03g27010 | Os03g0387800 | - | Detail |
| C1H3g07066 | 3:13,868,394-13,874,404 | + | C2H3g04924 | CX3g030395 | LOC_Os03g27019 | Os03g0387900 | - | Detail |
| C1H3g24480 | 3:13,876,485-13,878,787 | - | C2H3g03183 | CX3g026341 | LOC_Os03g27030 | Os03g0388000 | - | Detail |
| C1H3g21976 | 3:13,880,296-13,882,204 | - | C2H3g20630 | CX3g027742 | LOC_Os03g27040 | Os03g0388100 | - | Detail |
| C1H3g00293 | 3:13,898,142-13,910,383 | + | C2H3g29219 | CX3g030335 | LOC_Os03g27080 | Os03g0388500 | - | Detail |
| C1H3g09239 | 3:13,916,455-13,917,801 | - | C2H3g29965 | CX3g028996 | LOC_Os03g27090 | Os03g0388600 | Os2R_MYB38 | Detail |
| C1H3g24884 | 3:13,930,422-13,931,774 | + | C2H3g12804 | CX3g027644 | LOC_Os03g27110 | Os03g0388800 | OsSG34 | Detail |
| C1H3g20016 | 3:13,932,642-13,934,529 | - | C2H3g15221 | CX3g026189 | LOC_Os03g27120 | Os03g0388900 | OsMC1 | Detail |
| C1H3g10570 | 3:13,953,330-13,954,743 | - | C2H3g04943 | CX3g025998 | LOC_Os03g27170 | Os03g0389000 | OsMC3 | Detail |
| C1H3g25808 | 3:13,958,378-13,962,663 | - | C2H3g08633 | CX3g029196 | LOC_Os03g27190 | Os03g0389100 | OsMC8 | Detail |
| C1H3g15024 | 3:13,983,663-13,983,935 | - | C2H3g29112 | - | - | Os03g0389175 | - | Detail |
| C1H3g15059 | 3:13,985,665-13,985,925 | - | C2H3g00005 | CX3g030618 | LOC_Os03g27210 | Os03g0389400 | OsMC2 | Detail |
| C1H3g23745 | 3:13,986,419-13,987,388 | - | C2H3g14323 | CX3g030618 | LOC_Os03g27210 | Os03g0389400 | OsMC2 | Detail |
| C1H3g20114 | 3:14,008,256-14,012,688 | + | C2H3g24243 | CX3g025732 | LOC_Os03g27230 | Os03g0389700 | OsDAHPS1, DAHPS1 | Detail |
| C1H3g30971 | 3:14,017,647-14,025,052 | + | C2H3g12972 | CX3g028319 | LOC_Os03g27250 | Os03g0389900 | - | Detail |
| C1H3g19742 | 3:14,026,045-14,028,327 | - | C2H3g06738 | CX3g027960 | LOC_Os03g27260 | Os03g0390000 | - | Detail |
| C1H3g17252 | 3:14,032,066-14,036,406 | - | C2H3g21967 | CX3g031288 | LOC_Os03g27280 | Os03g0390200 | - | Detail |
| C1H3g08377 | 3:14,053,732-14,057,146 | + | C2H3g10154 | CX3g029813 | LOC_Os03g27290 | Os03g0390400 | - | Detail |
| C1H3g03476 | 3:14,060,129-14,062,030 | + | C2H3g16150 | CX3g025879 | LOC_Os03g27310 | Os03g0390600 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX5g040726 | 5:21,302,802-21,304,121 | - | C1H5g20040 | C2H5g13083 | LOC_Os05g43670 | Os05g0512400 | - | Detail |
| CX5g037888 | 5:21,311,886-21,313,393 | + | C1H5g08173 | C2H5g03611 | LOC_Os05g43690 | Os05g0512600 | - | Detail |
| CX5g039008 | 5:21,328,343-21,330,447 | + | C1H5g02984 | C2H5g16900 | LOC_Os05g43760 | Os05g0513100 | - | Detail |
| CX5g040071 | 5:21,338,940-21,343,047 | + | C1H5g10552 | C2H5g24258 | LOC_Os05g43770 | Os05g0513200 | - | Detail |
| CX5g039684 | 5:21,346,303-21,349,184 | + | C1H5g13302 | C2H5g09149 | LOC_Os05g43780 | Os05g0513350 | - | Detail |
| CX5g038930 | 5:21,350,805-21,353,721 | + | C1H5g09663 | C2H5g26918 | LOC_Os05g43790 | Os05g0513400 | - | Detail |
| CX5g036821 | 5:21,358,323-21,359,690 | - | C1H5g15162 | C2H5g05557 | LOC_Os05g43800 | Os05g0513600 | - | Detail |
| CX5g036949 | 5:21,360,225-21,362,703 | - | C1H5g20443 | C2H5g13727 | LOC_Os05g43810 | Os05g0513700 | - | Detail |
| CX5g036780 | 5:21,366,503-21,368,269 | + | C1H5g18479 | C2H5g12600 | LOC_Os05g43820 | Os05g0513800 | - | Detail |
| CX5g040516 | 5:21,368,849-21,372,374 | - | C1H5g21593 | C2H5g13306 | LOC_Os05g43830 | Os05g0513900 | - | Detail |
| CX5g039381 | 5:21,376,869-21,378,404 | + | C1H5g29251 | C2H5g05539 | LOC_Os05g43840 | Os05g0514200 | - | Detail |
| CX5g039707 | 5:21,384,699-21,388,930 | + | C1H5g31291 | C2H5g17185 | LOC_Os05g43850 | Os05g0514300 | - | Detail |
| CX5g039655 | 5:21,391,866-21,393,483 | - | C1H5g31864 | C2H5g21883 | LOC_Os05g43860 | Os05g0514400 | - | Detail |
| CX5g039558 | 5:21,396,311-21,398,456 | + | C1H5g13883 | C2H5g27546 | LOC_Os05g43870 | Os05g0514500 | - | Detail |
| CX5g037140 | 5:21,403,569-21,404,723 | - | C1H5g27703 | C2H5g19387 | LOC_Os05g43880 | Os05g0514600 | GA2OX4, OsGA2ox4, ga2ox 4, OsGA2ox-4 | Detail |
| CX5g039348 | 5:21,417,510-21,417,755 | + | C1H5g12361 | C2H5g15452 | LOC_Os05g43895 | Os05g0514800 | - | Detail |
| CX5g037133 | 5:21,420,006-21,420,212 | + | - | - | - | - | - | Detail |
| CX5g037839 | 5:21,427,472-21,428,467 | + | C1H5g18846 | C2H5g22372 | LOC_Os05g43910 | Os05g0515200 | - | Detail |
| CX5g037416 | 5:21,435,417-21,436,061 | + | C1H5g18846 | C2H5g22372 | LOC_Os05g43910 | Os05g0515200 | - | Detail |
| CX5g037729 | 5:21,445,071-21,450,289 | + | C1H5g31857 | C2H5g05053 | LOC_Os05g43920 | Os05g0515400 | OsARF14, OsARF3la, OsARF3la/OsARF14 | Detail |