| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g11336 | 1:12,744,868-12,745,764 | - | C2H1g08931 | CX1g001694 | LOC_Os01g24820 | Os01g0350300 | - | Detail |
| C1H1g00555 | 1:12,780,209-12,787,876 | + | C2H1g21333 | CX1g002860 | LOC_Os01g24880 | Os01g0350900 | IPI1 | Detail |
| C1H1g05982 | 1:12,795,921-12,802,116 | + | C2H1g14607 | CX1g005272 | LOC_Os01g24940 | Os01g0351100 | - | Detail |
| C1H1g06101 | 1:12,810,973-12,818,003 | + | C2H1g09806 | CX1g000433 | LOC_Os01g24940 | Os01g0351200 | - | Detail |
| C1H1g24498 | 1:12,825,113-12,828,752 | - | C2H1g18699 | CX1g006080 | LOC_Os01g24960 | Os01g0351500 | - | Detail |
| C1H1g12342 | 1:12,834,829-12,837,777 | + | C2H1g23303 | CX1g002020 | LOC_Os01g24980 | Os01g0351800 | - | Detail |
| C1H1g19518 | 1:12,842,812-12,846,024 | + | C2H1g18138 | CX1g002475 | LOC_Os01g25010 | Os01g0352100 | - | Detail |
| C1H1g19827 | 1:12,863,034-12,863,307 | + | C2H1g07713 | CX1g006850 | - | - | - | Detail |
| C1H1g16000 | 1:12,892,251-12,893,187 | + | C2H1g07698 | CX1g003259 | LOC_Os01g25100 | Os01g0353400 | OsGST4 | Detail |
| C1H1g26956 | 1:12,897,173-12,900,081 | + | C2H1g26082 | CX1g006645 | LOC_Os01g25110 | Os01g0353600 | - | Detail |
| C1H1g21653 | 1:12,947,774-12,948,316 | - | C2H1g28232 | CX1g000417 | LOC_Os01g25160 | Os01g0348900 | OsJRL, OsMBL1, OsSalt | Detail |
| C1H1g17593 | 1:12,953,647-12,955,271 | - | C2H1g28563 | CX1g005641 | LOC_Os03g29584 | Os03g0409600 | - | Detail |
| C1H1g31563 | 1:12,956,258-12,965,423 | - | C2H1g15011 | CX1g006951 | LOC_Os01g25189 | Os01g0354200 | - | Detail |
| C1H1g07040 | 1:12,974,443-12,978,461 | + | C2H1g21879 | CX1g002132 | LOC_Os01g25240 | Os01g0354700 | - | Detail |
| C1H1g01971 | 1:13,011,704-13,012,746 | - | - | CX1g003993 | - | - | - | Detail |
| C1H1g30039 | 1:13,033,815-13,034,787 | + | C2H1g17996 | CX1g000600 | LOC_Os01g27580 | Os01g0872900 | - | Detail |
| C1H1g26223 | 1:13,041,692-13,053,739 | - | C2H1g16578 | CX1g005915 | LOC_Os01g25320 | Os01g0355500 | - | Detail |
| C1H1g04484 | 1:13,054,602-13,055,465 | + | C2H1g00764 | CX1g003598 | - | - | - | Detail |
| C1H1g04297 | 1:13,062,797-13,073,588 | + | C2H1g03083 | CX1g006277 | LOC_Os01g25330 | Os01g0355600 | - | Detail |
| C1H1g19528 | 1:13,091,318-13,095,934 | - | C2H1g27635 | CX1g006683 | LOC_Os01g25370 | Os01g0355900 | OsELS1, OsELS1.3 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX5g040726 | 5:21,302,802-21,304,121 | - | C1H5g20040 | C2H5g13083 | LOC_Os05g43670 | Os05g0512400 | - | Detail |
| CX5g037888 | 5:21,311,886-21,313,393 | + | C1H5g08173 | C2H5g03611 | LOC_Os05g43690 | Os05g0512600 | - | Detail |
| CX5g039008 | 5:21,328,343-21,330,447 | + | C1H5g02984 | C2H5g16900 | LOC_Os05g43760 | Os05g0513100 | - | Detail |
| CX5g040071 | 5:21,338,940-21,343,047 | + | C1H5g10552 | C2H5g24258 | LOC_Os05g43770 | Os05g0513200 | - | Detail |
| CX5g039684 | 5:21,346,303-21,349,184 | + | C1H5g13302 | C2H5g09149 | LOC_Os05g43780 | Os05g0513350 | - | Detail |
| CX5g038930 | 5:21,350,805-21,353,721 | + | C1H5g09663 | C2H5g26918 | LOC_Os05g43790 | Os05g0513400 | - | Detail |
| CX5g036821 | 5:21,358,323-21,359,690 | - | C1H5g15162 | C2H5g05557 | LOC_Os05g43800 | Os05g0513600 | - | Detail |
| CX5g036949 | 5:21,360,225-21,362,703 | - | C1H5g20443 | C2H5g13727 | LOC_Os05g43810 | Os05g0513700 | - | Detail |
| CX5g036780 | 5:21,366,503-21,368,269 | + | C1H5g18479 | C2H5g12600 | LOC_Os05g43820 | Os05g0513800 | - | Detail |
| CX5g040516 | 5:21,368,849-21,372,374 | - | C1H5g21593 | C2H5g13306 | LOC_Os05g43830 | Os05g0513900 | - | Detail |
| CX5g039381 | 5:21,376,869-21,378,404 | + | C1H5g29251 | C2H5g05539 | LOC_Os05g43840 | Os05g0514200 | - | Detail |
| CX5g039707 | 5:21,384,699-21,388,930 | + | C1H5g31291 | C2H5g17185 | LOC_Os05g43850 | Os05g0514300 | - | Detail |
| CX5g039655 | 5:21,391,866-21,393,483 | - | C1H5g31864 | C2H5g21883 | LOC_Os05g43860 | Os05g0514400 | - | Detail |
| CX5g039558 | 5:21,396,311-21,398,456 | + | C1H5g13883 | C2H5g27546 | LOC_Os05g43870 | Os05g0514500 | - | Detail |
| CX5g037140 | 5:21,403,569-21,404,723 | - | C1H5g27703 | C2H5g19387 | LOC_Os05g43880 | Os05g0514600 | GA2OX4, OsGA2ox4, ga2ox 4, OsGA2ox-4 | Detail |
| CX5g039348 | 5:21,417,510-21,417,755 | + | C1H5g12361 | C2H5g15452 | LOC_Os05g43895 | Os05g0514800 | - | Detail |
| CX5g037133 | 5:21,420,006-21,420,212 | + | - | - | - | - | - | Detail |
| CX5g037839 | 5:21,427,472-21,428,467 | + | C1H5g18846 | C2H5g22372 | LOC_Os05g43910 | Os05g0515200 | - | Detail |
| CX5g037416 | 5:21,435,417-21,436,061 | + | C1H5g18846 | C2H5g22372 | LOC_Os05g43910 | Os05g0515200 | - | Detail |
| CX5g037729 | 5:21,445,071-21,450,289 | + | C1H5g31857 | C2H5g05053 | LOC_Os05g43920 | Os05g0515400 | OsARF14, OsARF3la, OsARF3la/OsARF14 | Detail |