| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g08866 | 3:4,746,841-4,749,557 | + | C2H3g27684 | CX3g025008 | LOC_Os03g10460 | Os03g0201700 | - | Detail |
| C1H3g26823 | 3:4,749,420-4,752,363 | - | C2H3g15317 | CX3g027908 | LOC_Os03g10469 | Os03g0201800 | - | Detail |
| C1H3g22443 | 3:4,753,242-4,757,638 | - | C2H3g07444 | CX3g027908 | LOC_Os03g10478 | Os03g0201901 | - | Detail |
| C1H3g14443 | 3:4,763,199-4,766,780 | - | C2H3g09161 | CX3g028036 | LOC_Os03g10500 | Os03g0202001 | - | Detail |
| C1H3g22113 | 3:4,769,015-4,772,493 | - | C2H3g24025 | CX3g026152 | LOC_Os03g10510 | Os03g0202200 | OsVDAC5 | Detail |
| C1H3g27837 | 3:4,773,524-4,777,490 | - | C2H3g13194 | CX3g030169 | LOC_Os03g10520 | Os03g0202300 | - | Detail |
| C1H3g27666 | 3:4,778,936-4,781,970 | - | C2H3g17561 | CX3g025689 | LOC_Os03g10590 | Os03g0203000 | - | Detail |
| C1H3g27625 | 3:4,785,357-4,791,941 | + | C2H3g21513 | CX3g029844 | LOC_Os03g10600 | Os03g0203100 | - | Detail |
| C1H3g03653 | 3:4,804,314-4,805,361 | + | C2H3g08169 | CX3g027943 | LOC_Os03g10620 | Os03g0203200 | D14, D88, D88/D14, qPPB3, HTD4 | Detail |
| C1H3g22146 | 3:4,815,496-4,822,429 | + | C2H3g27974 | CX3g027605 | LOC_Os03g10640 | Os03g0203700 | - | Detail |
| C1H3g29891 | 3:4,824,485-4,825,962 | - | C2H3g08201 | CX3g028482 | LOC_Os03g10650 | Os03g0203800 | - | Detail |
| C1H3g06442 | 3:4,845,357-4,849,712 | + | C2H3g30001 | CX3g026677 | LOC_Os03g10680 | Os03g0204100 | - | Detail |
| C1H3g30369 | 3:4,853,202-4,854,391 | + | C2H3g23547 | CX3g029117 | LOC_Os03g10730 | - | - | Detail |
| C1H3g08546 | 3:4,861,677-4,862,096 | - | C2H3g15767 | - | LOC_Os03g10710 | Os03g0204500 | - | Detail |
| C1H3g00980 | 3:4,865,396-4,867,084 | + | C2H3g08384 | CX3g029117 | LOC_Os03g10730 | - | - | Detail |
| C1H3g16112 | 3:4,872,534-4,875,426 | + | C2H3g07827 | CX3g030767 | LOC_Os03g10730 | Os03g0157000 | - | Detail |
| C1H3g05329 | 3:4,876,244-4,876,674 | - | C2H3g15453 | - | LOC_Os03g10740 | Os03g0204900 | - | Detail |
| C1H3g13244 | 3:4,882,706-4,888,504 | - | C2H3g17885 | CX3g028803 | LOC_Os03g10750 | Os03g0205000 | SPL35 | Detail |
| C1H3g05069 | 3:4,891,051-4,892,879 | - | C2H3g11575 | - | LOC_Os03g10755 | Os03g0205150 | - | Detail |
| C1H3g10116 | 3:4,895,571-4,896,991 | - | C2H3g22270 | CX3g030429 | LOC_Os03g10770 | Os03g0205300 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX5g039378 | 5:21,068,529-21,068,870 | + | C1H5g05296 | C2H5g17893 | - | Os05g0429100 | - | Detail |
| CX5g040514 | 5:21,070,192-21,070,542 | + | - | - | - | Os03g0229000 | - | Detail |
| CX5g040368 | 5:21,072,131-21,072,352 | + | - | - | - | Os12g0568166 | - | Detail |
| CX5g036865 | 5:21,078,738-21,082,078 | + | C1H5g04787 | C2H5g13301 | LOC_Os05g43230 | Os05g0508300 | - | Detail |
| CX5g036817 | 5:21,083,845-21,088,047 | + | C1H5g17723 | C2H5g18645 | LOC_Os05g43240 | Os05g0508400 | - | Detail |
| CX5g039246 | 5:21,090,305-21,091,889 | + | C1H5g24403 | C2H5g18041 | - | Os05g0169000 | - | Detail |
| CX5g040481 | 5:21,092,882-21,095,020 | + | C1H5g06065 | C2H5g09062 | LOC_Os05g43252 | Os05g0508500 | OsTrxh2 | Detail |
| CX5g036989 | 5:21,096,805-21,099,114 | + | - | C2H5g04532 | - | - | - | Detail |
| CX5g040869 | 5:21,105,991-21,108,107 | + | - | C2H5g27308 | - | - | - | Detail |
| CX5g038536 | 5:21,114,622-21,125,161 | + | C1H5g01563 | C2H5g17689 | LOC_Os05g43280 | Os05g0508700 | - | Detail |
| CX5g041072 | 5:21,127,770-21,131,845 | + | C1H5g09451 | C2H5g12299 | LOC_Os05g43300 | Os05g0508800 | - | Detail |
| CX5g039371 | 5:21,134,225-21,134,846 | + | C1H5g08280 | C2H5g28018 | LOC_Os05g43310 | Os05g0508900 | - | Detail |
| CX5g037153 | 5:21,137,127-21,140,049 | + | C1H5g11413 | C2H5g05240 | LOC_Os05g43360 | Os05g0509200 | - | Detail |
| CX5g039836 | 5:21,141,076-21,146,976 | + | C1H5g23290 | C2H5g08227 | LOC_Os05g43374 | Os05g0509300 | - | Detail |
| CX5g038317 | 5:21,147,448-21,149,663 | - | C1H5g18210 | C2H5g21027 | LOC_Os05g43380 | Os05g0509400 | - | Detail |
| CX5g039669 | 5:21,150,972-21,151,610 | + | - | - | - | - | - | Detail |
| CX5g039296 | 5:21,153,746-21,156,663 | - | C1H5g09672 | C2H5g23315 | LOC_Os05g43390 | Os05g0509500 | - | Detail |
| CX5g041045 | 5:21,162,367-21,162,699 | + | C1H5g24566 | C2H5g08602 | LOC_Os05g44410 | Os05g0509800 | - | Detail |
| CX5g041066 | 5:21,163,788-21,165,018 | - | C1H5g06721 | C2H5g17414 | LOC_Os05g43440 | Os05g0509700 | OsmtSSB1, TA1 | Detail |
| CX5g040440 | 5:21,167,395-21,169,630 | - | C1H5g24969 | C2H5g13885 | LOC_Os05g43450 | Os05g0509900 | - | Detail |