| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g12203 | 1:1,433,916-1,434,686 | - | C2H1g16545 | CX1g005405 | - | - | - | Detail |
| C1H1g15246 | 1:1,434,378-1,436,403 | + | C2H1g07174 | - | - | Os01g0131600 | - | Detail |
| C1H1g02133 | 1:1,442,836-1,445,842 | + | C2H1g05018 | CX1g003409 | LOC_Os01g04030 | Os01g0131800 | - | Detail |
| C1H1g08168 | 1:1,446,206-1,446,508 | + | C2H1g20844 | - | - | - | - | Detail |
| C1H1g15335 | 1:1,446,251-1,446,618 | - | C2H1g04580 | CX1g004518 | LOC_Os01g04040 | Os01g0131900 | - | Detail |
| C1H1g16579 | 1:1,448,499-1,449,002 | - | C2H1g05431 | CX1g000794 | LOC_Os01g04050 | Os01g0132000 | - | Detail |
| C1H1g12945 | 1:1,452,792-1,457,386 | + | C2H1g02524 | CX1g001373 | LOC_Os01g04070 | Os01g0132100 | - | Detail |
| C1H1g14509 | 1:1,464,182-1,467,138 | - | C2H1g22548 | CX1g001468 | LOC_Os01g04090 | Os01g0132400 | - | Detail |
| C1H1g11742 | 1:1,472,648-1,473,399 | + | C2H1g29009 | CX1g006344 | LOC_Os01g04100 | Os01g0132500 | - | Detail |
| C1H1g15684 | 1:1,479,815-1,481,666 | - | C2H1g03848 | CX1g005382 | LOC_Os01g04110 | Os01g0132700 | - | Detail |
| C1H1g26304 | 1:1,501,494-1,505,717 | - | C2H1g01357 | CX1g003338 | LOC_Os01g04130 | Os01g0132800 | OsCRS2, CRS2 | Detail |
| C1H1g25093 | 1:1,512,116-1,515,949 | + | C2H1g27153 | CX1g006935 | LOC_Os01g04160 | Os01g0133100 | - | Detail |
| C1H1g00222 | 1:1,520,778-1,531,979 | + | C2H1g09944 | CX1g002370 | LOC_Os01g04190 | Os01g0133400 | OspGlcT1 | Detail |
| C1H1g18877 | 1:1,533,346-1,534,714 | + | C2H1g25293 | CX1g004995 | LOC_Os01g04210 | Os01g0133600 | - | Detail |
| C1H1g05286 | 1:1,538,596-1,540,317 | + | C2H1g22644 | CX1g006533 | LOC_Os01g04220 | Os01g0133700 | - | Detail |
| C1H1g27859 | 1:1,541,956-1,544,123 | + | C2H1g03551 | CX1g002225 | LOC_Os01g04230 | Os01g0133900 | - | Detail |
| C1H1g26351 | 1:1,558,608-1,562,381 | + | C2H1g29327 | CX1g006646 | LOC_Os01g04260 | Os01g0134500 | - | Detail |
| C1H1g03192 | 1:1,572,602-1,574,485 | + | C2H1g24695 | CX1g006565 | LOC_Os01g04280 | Os01g0134700 | - | Detail |
| C1H1g21390 | 1:1,577,753-1,580,523 | - | C2H1g28679 | CX1g007193 | LOC_Os01g04290 | Os01g0134800 | - | Detail |
| C1H1g29863 | 1:1,583,684-1,585,953 | - | C2H1g27423 | CX1g006983 | LOC_Os01g04300 | Os01g0134900 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX5g039977 | 5:20,231,347-20,231,574 | - | - | - | - | - | - | Detail |
| CX5g038773 | 5:20,235,278-20,235,994 | + | C1H5g03150 | C2H5g28435 | LOC_Os05g40950 | Os05g0488500 | - | Detail |
| CX5g037471 | 5:20,237,185-20,239,217 | - | C1H5g10864 | C2H5g15684 | LOC_Os05g40960 | Os05g0488600 | - | Detail |
| CX5g036864 | 5:20,245,953-20,246,924 | - | C1H5g29301 | C2H5g10762 | LOC_Os05g40980 | Os05g0488800 | OsSIRP1, SIRP1 | Detail |
| CX5g038499 | 5:20,249,454-20,252,049 | + | C1H5g30435 | C2H5g22368 | LOC_Os05g40990 | Os05g0488900 | - | Detail |
| CX5g038470 | 5:20,255,764-20,260,075 | + | C1H5g00494 | C2H5g07104 | LOC_Os05g41000 | Os05g0489000 | - | Detail |
| CX5g040097 | 5:20,263,123-20,265,333 | + | C1H5g12778 | C2H5g00595 | LOC_Os05g41010 | Os05g0489100 | - | Detail |
| CX5g037795 | 5:20,269,498-20,269,914 | - | C1H5g05615 | C2H5g15924 | LOC_Os05g41030 | Os05g0489200 | - | Detail |
| CX5g037436 | 5:20,273,734-20,275,915 | - | C1H5g29364 | C2H5g27372 | LOC_Os05g41060 | Os05g0489600 | - | Detail |
| CX5g037252 | 5:20,279,882-20,282,254 | + | C1H5g11382 | C2H5g09500 | LOC_Os05g41070 | Os05g0489700 | HBF1, OsbZIP42 | Detail |
| CX5g039059 | 5:20,283,914-20,284,180 | + | C1H5g00326 | C2H5g01943 | - | Os05g0489750 | - | Detail |
| CX5g039132 | 5:20,284,936-20,287,162 | - | C1H5g30374 | C2H5g05322 | LOC_Os05g41080 | Os05g0489800 | OsCENH3 | Detail |
| CX5g038078 | 5:20,288,531-20,292,209 | - | C1H5g17926 | C2H5g07453 | LOC_Os05g41090 | Os05g0489900 | DMI3, OsDMI3, OsCCaMK1, OsCCaMK, OsCCAMK, CCAMK | Detail |
| CX5g037785 | 5:20,293,212-20,295,191 | - | C1H5g27285 | C2H5g20839 | LOC_Os05g41100 | Os05g0490000 | - | Detail |
| CX5g039362 | 5:20,295,508-20,297,068 | + | C1H5g14042 | C2H5g02383 | LOC_Os05g41110 | Os05g0490100 | - | Detail |
| CX5g038500 | 5:20,298,318-20,303,916 | + | C1H5g00258 | C2H5g16191 | LOC_Os05g41120 | Os05g0490200 | - | Detail |
| CX5g037621 | 5:20,307,268-20,308,323 | - | C1H5g17707 | C2H5g27761 | LOC_Os05g41130 | Os05g0490300 | - | Detail |
| CX5g039490 | 5:20,316,972-20,319,000 | - | C1H5g17579 | C2H5g07017 | LOC_Os05g41150 | Os05g0490400 | - | Detail |
| CX5g040508 | 5:20,319,689-20,319,991 | + | - | - | - | - | - | Detail |
| CX5g038163 | 5:20,320,542-20,323,098 | - | C1H5g17579 | C2H5g07017 | LOC_Os05g41160 | Os05g0490500 | - | Detail |