| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H2g04839 | 2:9,286,424-9,292,908 | - | C2H2g06770 | CX2g020121 | LOC_Os02g17460 | Os02g0274600 | - | Detail |
| C1H2g13080 | 2:9,294,659-9,299,722 | + | C2H2g12255 | CX2g019862 | LOC_Os02g17470 | Os02g0274700 | - | Detail |
| C1H2g20851 | 2:9,309,489-9,316,352 | + | C2H2g07148 | CX2g020679 | LOC_Os02g17500 | Os02g0274900 | - | Detail |
| C1H2g27766 | 2:9,321,715-9,322,970 | + | C2H2g16988 | CX2g021332 | LOC_Os02g17520 | Os02g0275100 | - | Detail |
| C1H2g18414 | 2:9,323,805-9,330,033 | - | C2H2g25493 | CX2g022654 | LOC_Os02g17534 | Os02g0275200 | - | Detail |
| C1H2g28570 | 2:9,352,531-9,357,435 | - | C2H2g11418 | CX2g024094 | LOC_Os02g17620 | Os02g0276200 | - | Detail |
| C1H2g09318 | 2:9,365,893-9,369,178 | - | C2H2g13253 | CX2g019729 | LOC_Os02g17640 | Os02g0276400 | - | Detail |
| C1H2g06211 | 2:9,370,161-9,378,467 | - | C2H2g02640 | CX2g023106 | LOC_Os02g17650 | Os02g0276500 | OsVTE1 | Detail |
| C1H2g04949 | 2:9,406,805-9,413,716 | - | C2H2g21214 | CX2g020993 | LOC_Os02g17680 | Os02g0276900 | - | Detail |
| C1H2g26261 | 2:9,423,589-9,427,459 | + | C2H2g07248 | CX2g020060 | - | Os08g0106700 | - | Detail |
| C1H2g06748 | 2:9,430,997-9,436,193 | + | C2H2g23233 | CX2g023495 | LOC_Os02g17700 | Os02g0277600 | - | Detail |
| C1H2g21417 | 2:9,437,083-9,438,617 | - | C2H2g21422 | CX2g019451 | LOC_Os02g17710 | Os02g0553000 | - | Detail |
| C1H2g09887 | 2:9,438,752-9,439,781 | - | C2H2g21422 | CX2g019451 | LOC_Os02g17710 | Os02g0277700 | - | Detail |
| C1H2g04601 | 2:9,447,295-9,452,328 | + | C2H2g09294 | CX2g022207 | LOC_Os02g17760 | Os02g0278400 | - | Detail |
| C1H2g17404 | 2:9,453,585-9,453,983 | - | - | CX2g024163 | LOC_Os02g17770 | - | - | Detail |
| C1H2g04831 | 2:9,456,074-9,467,318 | - | C2H2g03135 | CX2g024821 | LOC_Os02g17780 | Os02g0278700 | OsCPS1, OsCPS1<sub>ent</sub> | Detail |
| C1H2g21563 | 2:9,490,847-9,493,855 | + | C2H2g23443 | CX2g020444 | LOC_Os02g17850 | Os02g0279600 | - | Detail |
| C1H2g29701 | 2:9,497,516-9,502,072 | + | C2H2g02230 | CX2g020861 | LOC_Os02g17860 | Os02g0279800 | - | Detail |
| C1H2g07597 | 2:9,512,281-9,514,682 | - | - | - | - | - | - | Detail |
| C1H2g23928 | 2:9,520,031-9,521,283 | + | C2H2g21745 | CX2g019485 | LOC_Os02g17880 | Os02g0280200 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX5g038624 | 5:19,997,558-19,998,193 | + | C1H5g11883 | C2H5g02533 | LOC_Os05g40400 | Os05g0482501 | - | Detail |
| CX5g040561 | 5:20,006,979-20,010,595 | + | C1H5g01703 | C2H5g19376 | LOC_Os05g40410 | Os05g0482600 | - | Detail |
| CX5g037367 | 5:20,011,859-20,015,412 | - | C1H5g12944 | C2H5g12661 | LOC_Os05g40420 | Os05g0482700 | - | Detail |
| CX5g039418 | 5:20,089,141-20,089,836 | - | C1H5g04267 | C2H5g19500 | LOC_Os05g40630 | Os05g0484800 | - | Detail |
| CX5g036684 | 5:20,100,242-20,102,975 | - | C1H5g28621 | C2H5g29609 | LOC_Os05g40650 | Os05g0485000 | - | Detail |
| CX5g040127 | 5:20,104,281-20,108,161 | + | C1H5g20371 | C2H5g13383 | LOC_Os05g40700 | Os05g0485300 | - | Detail |
| CX5g040290 | 5:20,110,378-20,111,877 | + | C1H5g01527 | C2H5g03405 | LOC_Os05g40710 | Os05g0485400 | - | Detail |
| CX5g037319 | 5:20,113,188-20,117,308 | - | C1H5g12798 | C2H5g25060 | LOC_Os05g40720 | Os05g0485500 | - | Detail |
| CX5g037058 | 5:20,117,852-20,119,237 | + | C1H5g09644 | C2H5g23682 | LOC_Os05g40730 | Os05g0500300 | - | Detail |
| CX5g040391 | 5:20,121,045-20,121,245 | - | - | - | - | - | - | Detail |
| CX5g039326 | 5:20,123,090-20,125,273 | - | C1H5g20204 | C2H5g20005 | LOC_Os05g40740 | Os05g0485800 | - | Detail |
| CX5g040801 | 5:20,136,579-20,142,272 | - | C1H5g25266 | C2H5g22327 | LOC_Os05g40770 | Os05g0486100 | - | Detail |
| CX5g040354 | 5:20,145,063-20,147,279 | - | C1H5g06940 | C2H5g05566 | LOC_Os05g40780 | Os05g0486200 | - | Detail |
| CX5g040282 | 5:20,153,441-20,160,209 | + | C1H5g23574 | C2H5g24759 | LOC_Os05g40790 | Os05g0486300 | - | Detail |
| CX5g041035 | 5:20,163,910-20,165,162 | - | - | C2H5g08054 | - | Os05g0429100 | - | Detail |
| CX5g037737 | 5:20,183,925-20,190,464 | - | C1H5g05720 | C2H5g21082 | LOC_Os05g40800 | Os05g0109400 | - | Detail |
| CX5g040679 | 5:20,191,611-20,197,766 | - | C1H5g03176 | C2H5g03168 | LOC_Os05g40810 | Os05g0486600 | - | Detail |
| CX5g040595 | 5:20,200,064-20,201,535 | - | C1H5g07809 | C2H5g22924 | LOC_Os05g40820 | Os05g0486700 | - | Detail |
| CX5g039413 | 5:20,220,519-20,221,384 | + | C1H5g30282 | C2H5g01005 | LOC_Os05g40850 | Os05g0487100 | OsCG5 | Detail |
| CX5g039526 | 5:20,226,484-20,227,077 | + | C1H5g29314 | C2H5g08697 | LOC_Os05g40890 | Os05g0487300 | - | Detail |