| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g14233 | 3:15,156,613-15,160,158 | + | C2H3g00155 | CX3g025201 | LOC_Os03g29260 | Os03g0406200 | - | Detail |
| C1H3g04639 | 3:15,163,503-15,164,632 | - | - | CX3g028493 | LOC_Os03g29270 | Os07g0614400 | qSOR1, DRL1 | Detail |
| C1H3g19733 | 3:15,193,201-15,193,658 | - | - | - | - | - | - | Detail |
| C1H3g31034 | 3:15,218,594-15,221,494 | + | C2H3g23059 | CX3g026877 | LOC_Os03g29340 | Os03g0406900 | OsMac4 | Detail |
| C1H3g30818 | 3:15,221,494-15,229,802 | - | C2H3g26359 | CX3g030450 | LOC_Os03g29350 | Os03g0407000 | - | Detail |
| C1H3g12617 | 3:15,257,670-15,258,152 | - | C2H3g08674 | CX3g026274 | - | Os03g0407400 | GS3 | Detail |
| C1H3g17471 | 3:15,271,293-15,274,630 | - | C2H3g00647 | CX3g025160 | LOC_Os03g29410 | Os03g0407900 | - | Detail |
| C1H3g24666 | 3:15,294,275-15,294,892 | + | - | - | - | - | - | Detail |
| C1H3g04154 | 3:15,299,813-15,300,530 | - | - | - | - | - | - | Detail |
| C1H3g10731 | 3:15,305,209-15,310,040 | + | C2H3g15951 | CX3g027064 | LOC_Os03g29470 | Os03g0408500 | - | Detail |
| C1H3g25797 | 3:15,312,759-15,314,366 | - | C2H3g19711 | CX3g025952 | LOC_Os03g29480 | Os03g0408600 | NSP1, Os NSP1, NSP1 | Detail |
| C1H3g31871 | 3:15,344,118-15,348,167 | - | C2H3g04400 | CX3g026777 | LOC_Os03g29570 | Os03g0409400 | - | Detail |
| C1H3g21807 | 3:15,351,979-15,352,526 | + | C2H3g25735 | CX3g031255 | LOC_Os03g29584 | - | - | Detail |
| C1H3g12159 | 3:15,367,467-15,370,776 | + | C2H3g24065 | CX3g031178 | LOC_Os03g29630 | Os03g0410100 | - | Detail |
| C1H3g23458 | 3:15,380,824-15,382,453 | - | - | - | - | - | - | Detail |
| C1H3g17148 | 3:15,384,360-15,384,704 | - | C2H3g24471 | CX3g026992 | LOC_Os03g29680 | Os03g0410300 | - | Detail |
| C1H3g03774 | 3:15,397,879-15,401,261 | - | C2H3g16726 | CX3g028649 | LOC_Os03g29730 | Os03g0410700 | - | Detail |
| C1H3g16818 | 3:15,401,512-15,403,635 | + | C2H3g26637 | CX3g029764 | LOC_Os03g29740 | Os03g0410900 | - | Detail |
| C1H3g23163 | 3:15,410,176-15,416,321 | + | C2H3g25819 | CX3g026328 | LOC_Os03g29750 | Os03g0411000 | - | Detail |
| C1H3g09595 | 3:15,426,707-15,432,154 | + | C2H3g03408 | CX3g029428 | LOC_Os03g29760 | Os03g0411100 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX5g038116 | 5:19,054,073-19,054,600 | - | C1H5g08079 | C2H5g12287 | LOC_Os05g38600 | Os05g0460900 | - | Detail |
| CX5g039642 | 5:19,057,062-19,061,418 | - | C1H5g24060 | C2H5g19612 | LOC_Os05g38610 | Os05g0461000 | - | Detail |
| CX5g040414 | 5:19,063,362-19,064,036 | + | C1H5g20771 | C2H5g00940 | LOC_Os05g38620 | Os05g0461200 | - | Detail |
| CX5g037842 | 5:19,064,631-19,067,186 | - | C1H5g01830 | C2H5g14913 | LOC_Os05g38630 | Os05g0461300 | - | Detail |
| CX5g038395 | 5:19,070,313-19,070,564 | - | - | - | - | Os05g0461350 | - | Detail |
| CX5g038934 | 5:19,072,606-19,073,326 | - | C1H5g11008 | C2H5g14035 | LOC_Os05g38640 | Os05g0461400 | - | Detail |
| CX5g039712 | 5:19,081,992-19,082,279 | + | C1H5g05333 | C2H5g30394 | LOC_Os05g38660 | Os05g0461600 | - | Detail |
| CX5g037526 | 5:19,090,192-19,090,899 | - | C1H5g23888 | C2H5g00554 | LOC_Os05g38680 | Os05g0462000 | - | Detail |
| CX5g037861 | 5:19,107,101-19,108,255 | - | C1H5g10148 | C2H5g15789 | LOC_Os05g38690 | Os05g0462200 | - | Detail |
| CX5g038414 | 5:19,114,919-19,121,251 | - | C1H5g28074 | C2H5g10261 | LOC_Os05g38710 | Os05g0462301 | - | Detail |
| CX5g037480 | 5:19,129,455-19,130,813 | + | C1H5g08937 | C2H5g13178 | LOC_Os05g38720 | Os05g0462500 | - | Detail |
| CX5g038063 | 5:19,136,090-19,136,506 | - | - | C2H5g00997 | LOC_Os01g23600 | Os01g0337700 | - | Detail |
| CX5g040696 | 5:19,138,000-19,145,831 | - | C1H5g16481 | C2H5g23688 | LOC_Os05g38730 | Os05g0462600 | - | Detail |
| CX5g040997 | 5:19,147,495-19,147,806 | - | C1H5g21036 | C2H5g22701 | LOC_Os05g38740 | Os05g0462700 | - | Detail |
| CX5g040276 | 5:19,151,548-19,151,838 | - | C1H5g10476 | C2H5g30583 | LOC_Os05g38760 | Os05g0462900 | - | Detail |
| CX5g040728 | 5:19,152,975-19,154,830 | - | C1H5g21054 | C2H5g09732 | LOC_Os05g38770 | Os05g0463000 | - | Detail |
| CX5g041103 | 5:19,161,229-19,163,606 | - | C1H5g22054 | C2H5g02393 | LOC_Os05g38790 | Os05g0463300 | - | Detail |
| CX5g038806 | 5:19,163,926-19,166,363 | + | C1H5g20773 | C2H5g25319 | LOC_Os05g38800 | Os05g0463400 | - | Detail |
| CX5g039882 | 5:19,169,055-19,173,879 | + | C1H5g12108 | C2H5g01133 | LOC_Os05g38810 | Os05g0463500 | - | Detail |
| CX5g040078 | 5:19,176,192-19,178,797 | - | C1H5g15206 | C2H5g16713 | LOC_Os05g38820 | Os05g0463800 | HAP3B, OsHAP3B, OsNF-YB-3, NFYB3 | Detail |