| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g08986 | 3:11,128,853-11,130,496 | + | C2H3g27980 | CX3g026570 | LOC_Os03g21780 | Os03g0336000 | - | Detail |
| C1H3g23089 | 3:11,131,255-11,133,411 | - | C2H3g07010 | CX3g026449 | LOC_Os03g21790 | Os03g0336100 | FLOC3 | Detail |
| C1H3g19738 | 3:11,136,064-11,139,294 | + | C2H3g10640 | CX3g026687 | LOC_Os03g21800 | Os03g0336200 | - | Detail |
| C1H3g27626 | 3:11,143,575-11,154,159 | + | C2H3g27830 | CX3g028160 | LOC_Os03g21810 | Os03g0336300 | - | Detail |
| C1H3g30217 | 3:11,154,816-11,155,709 | - | C2H3g18341 | CX3g030935 | LOC_Os03g21820 | Os03g0336400 | - | Detail |
| C1H3g28885 | 3:11,169,242-11,172,338 | + | C2H3g17317 | CX3g028604 | LOC_Os03g21830 | Os03g0336500 | - | Detail |
| C1H3g10280 | 3:11,173,500-11,175,446 | - | C2H3g25854 | CX3g028387 | LOC_Os03g21840 | Os03g0336600 | - | Detail |
| C1H3g24720 | 3:11,178,138-11,181,445 | - | C2H3g04362 | - | - | - | - | Detail |
| C1H3g01271 | 3:11,191,795-11,198,911 | + | C2H3g05433 | CX3g031093 | LOC_Os03g21850 | Os03g0336700 | - | Detail |
| C1H3g17351 | 3:11,211,186-11,212,106 | - | C2H3g01245 | CX3g028904 | LOC_Os03g21870 | Os03g0336900 | - | Detail |
| C1H3g11607 | 3:11,217,673-11,217,930 | + | - | CX3g025352 | LOC_Os03g21880 | Os03g0337000 | - | Detail |
| C1H3g00780 | 3:11,223,405-11,224,102 | - | C2H3g01707 | CX3g028881 | - | - | - | Detail |
| C1H3g03171 | 3:11,227,280-11,237,870 | + | C2H3g03273 | CX3g031266 | LOC_Os03g21890 | Os03g0337500 | OsHAK8 | Detail |
| C1H3g23175 | 3:11,239,163-11,243,862 | - | C2H3g09138 | CX3g025972 | LOC_Os03g21914 | Os03g0714400 | - | Detail |
| C1H3g14863 | 3:11,245,308-11,247,551 | - | C2H3g27608 | CX3g028145 | LOC_Os03g21940 | Os03g0337800 | - | Detail |
| C1H3g25051 | 3:11,249,078-11,255,269 | - | C2H3g02212 | CX3g030549 | LOC_Os03g21950 | Os03g0337900 | - | Detail |
| C1H3g24711 | 3:11,260,550-11,263,372 | - | C2H3g08593 | CX3g028858 | LOC_Os03g21960 | Os03g0338000 | - | Detail |
| C1H3g23812 | 3:11,292,970-11,295,206 | + | C2H3g29715 | CX3g025638 | LOC_Os03g21970 | Os03g0338400 | - | Detail |
| C1H3g31030 | 3:11,297,782-11,301,352 | - | C2H3g29506 | CX3g030282 | LOC_Os03g21980 | Os03g0338600 | - | Detail |
| C1H3g02489 | 3:11,333,288-11,333,906 | - | C2H3g21921 | CX3g028477 | - | - | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX5g038677 | 5:18,457,194-18,461,670 | - | C1H5g30847 | C2H5g22407 | LOC_Os12g23400 | Os05g0256350 | - | Detail |
| CX5g039654 | 5:18,465,069-18,465,515 | + | - | C2H5g07457 | LOC_Os05g37530 | Os05g0447800 | - | Detail |
| CX5g039030 | 5:18,472,405-18,476,482 | + | C1H5g03822 | C2H5g11261 | LOC_Os05g37600 | Os05g0448300 | - | Detail |
| CX5g039241 | 5:18,493,411-18,494,418 | + | C1H5g28240 | C2H5g08320 | LOC_Os05g37640 | Os05g0448675 | - | Detail |
| CX5g037395 | 5:18,496,504-18,496,788 | - | C1H5g23210 | C2H5g04056 | - | Os05g0449100 | - | Detail |
| CX5g040111 | 5:18,497,408-18,498,850 | - | C1H5g23210 | C2H5g04056 | LOC_Os05g37660 | Os05g0449200 | - | Detail |
| CX5g037128 | 5:18,512,055-18,514,358 | + | C1H5g08417 | C2H5g04693 | LOC_Os05g37690 | Os05g0449500 | OsCOI1b, OsCOI1H, OsFbox260, Os_F0646 | Detail |
| CX5g040292 | 5:18,523,020-18,525,983 | + | C1H5g01253 | C2H5g26890 | LOC_Os05g37700 | Os05g0449600 | - | Detail |
| CX5g036943 | 5:18,534,387-18,534,605 | + | - | - | - | - | - | Detail |
| CX5g037176 | 5:18,536,715-18,537,788 | - | C1H5g19157 | C2H5g03693 | LOC_Os05g37730 | Os05g0449900 | Os2R_MYB57 | Detail |
| CX5g040510 | 5:18,543,810-18,543,992 | - | - | - | - | - | - | Detail |
| CX5g038050 | 5:18,552,496-18,552,663 | + | - | - | - | - | - | Detail |
| CX5g037438 | 5:18,559,706-18,559,855 | - | - | - | - | - | - | Detail |
| CX5g038946 | 5:18,559,918-18,560,088 | + | - | - | - | - | - | Detail |
| CX5g037869 | 5:18,564,559-18,565,374 | + | C1H5g14659 | C2H5g27025 | LOC_Os05g37780 | Os05g0450300 | - | Detail |
| CX5g039495 | 5:18,579,969-18,581,957 | + | C1H5g01767 | C2H5g25395 | LOC_Os05g37800 | Os05g0450600 | - | Detail |
| CX5g038272 | 5:18,599,096-18,602,352 | + | C1H5g07138 | C2H5g19098 | LOC_Os05g37820 | Os05g0451100 | OsPHT4;2 | Detail |
| CX5g039541 | 5:18,602,563-18,602,766 | - | - | - | - | Os05g0451200 | - | Detail |
| CX5g039929 | 5:18,603,363-18,605,063 | - | C1H5g30639 | C2H5g23791 | LOC_Os05g37830 | Os05g0451300 | - | Detail |
| CX5g038310 | 5:18,615,354-18,618,954 | + | C1H5g02168 | C2H5g16211 | LOC_Os05g37880 | Os05g0451900 | - | Detail |