| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H5g23911 | 5:22,286,210-22,288,992 | + | C2H5g14920 | CX5g039498 | LOC_Os05g47630 | Os05g0549600 | - | Detail |
| C1H5g02487 | 5:22,293,467-22,295,011 | + | C2H5g22501 | CX5g038154 | LOC_Os05g47640 | Os05g0549700 | - | Detail |
| C1H5g09801 | 5:22,312,224-22,313,390 | + | C2H5g14796 | CX5g037227 | LOC_Os05g47650 | Os05g0549800 | OsRAV12 | Detail |
| C1H5g13048 | 5:22,320,075-22,322,734 | - | C2H5g00683 | CX5g038879 | LOC_Os05g47660 | Os05g0549900 | - | Detail |
| C1H5g31388 | 5:22,322,774-22,323,282 | - | C2H5g14326 | CX5g038879 | LOC_Os05g47660 | Os05g0549900 | - | Detail |
| C1H5g29449 | 5:22,327,059-22,329,803 | + | C2H5g06469 | CX5g038362 | LOC_Os05g47670 | Os05g0550000 | - | Detail |
| C1H5g11690 | 5:22,330,129-22,332,480 | - | C2H5g21681 | CX5g039534 | LOC_Os05g47680 | Os05g0550100 | - | Detail |
| C1H5g16547 | 5:22,333,302-22,334,688 | - | C2H5g26670 | CX5g037514 | LOC_Os05g47690 | Os05g0550250 | - | Detail |
| C1H5g30856 | 5:22,336,934-22,337,224 | + | C2H5g18660 | CX5g038208 | LOC_Os05g47700 | Os05g0550300 | - | Detail |
| C1H5g29709 | 5:22,341,103-22,341,393 | + | C2H5g15027 | CX5g038446 | LOC_Os05g47730 | Os05g0550600 | - | Detail |
| C1H5g12523 | 5:22,341,748-22,345,902 | - | C2H5g25369 | CX5g038507 | LOC_Os05g47750 | Os05g0550700 | - | Detail |
| C1H5g30779 | 5:22,347,968-22,348,699 | - | C2H5g25369 | CX5g038507 | LOC_Os05g47750 | Os05g0550800 | - | Detail |
| C1H5g14447 | 5:22,351,742-22,352,791 | + | C2H5g08122 | CX5g037911 | LOC_Os05g47770 | Os05g0550800 | - | Detail |
| C1H5g23339 | 5:22,354,659-22,358,563 | + | C2H5g16301 | CX5g037911 | LOC_Os05g47770 | Os05g0550800 | - | Detail |
| C1H5g00731 | 5:22,362,672-22,371,372 | + | C2H5g06502 | CX5g040704 | LOC_Os05g47780 | Os05g0551000 | OsHRZ2, CLG1 | Detail |
| C1H5g06873 | 5:22,372,392-22,376,533 | - | C2H5g08056 | CX5g039561 | LOC_Os05g47790 | Os05g0551100 | - | Detail |
| C1H5g13696 | 5:22,392,268-22,393,261 | - | C2H5g20234 | CX5g039374 | LOC_Os05g47810 | Os05g0551350 | - | Detail |
| C1H5g06625 | 5:22,398,367-22,399,211 | - | C2H5g13179 | CX5g037243 | LOC_Os05g47820 | Os05g0551500 | - | Detail |
| C1H5g23725 | 5:22,403,041-22,403,838 | + | C2H5g14649 | CX5g038884 | LOC_Os05g47830 | Os05g0551600 | - | Detail |
| C1H5g04420 | 5:22,408,482-22,409,567 | - | C2H5g30187 | CX5g038373 | LOC_Os05g47840 | Os05g0551700 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g003750 | 1:22,868,342-22,870,363 | + | C1H1g02990 | C2H1g02801 | LOC_Os01g44360 | Os01g0634900 | - | Detail |
| CX1g004521 | 1:22,878,204-22,878,488 | + | C1H1g22221 | C2H1g02642 | LOC_Os01g44370 | Os01g0635000 | - | Detail |
| CX1g004179 | 1:22,883,745-22,884,047 | + | C1H1g22221 | C2H1g02642 | LOC_Os01g44390 | Os01g0635200 | - | Detail |
| CX1g001073 | 1:22,887,327-22,890,691 | + | C1H1g03527 | C2H1g14029 | LOC_Os01g44394 | Os01g0635400 | - | Detail |
| CX1g002888 | 1:22,896,869-22,897,573 | - | C1H5g28773 | - | LOC_Os01g44430 | Os01g0635550 | - | Detail |
| CX1g005715 | 1:22,905,026-22,905,343 | + | - | - | - | Os01g0635800 | - | Detail |
| CX1g000864 | 1:22,915,705-22,917,252 | - | C1H5g00625 | - | LOC_Os01g44950 | - | - | Detail |
| CX1g003935 | 1:22,918,716-22,921,006 | - | C1H1g27414 | C2H1g18946 | LOC_Os01g44960 | Os01g0636400 | - | Detail |
| CX1g001605 | 1:22,930,534-22,934,408 | + | C1H1g00331 | C2H1g07403 | LOC_Os01g44970 | Os01g0636500 | - | Detail |
| CX1g007252 | 1:22,936,839-22,939,753 | - | C1H1g13180 | C2H1g22263 | LOC_Os01g44980 | Os01g0637600 | OsPDF1B | Detail |
| CX1g000311 | 1:22,943,367-22,944,213 | + | C1H1g21245 | C2H1g15078 | LOC_Os01g45090 | Os01g0637800 | OsMYB305 | Detail |
| CX1g003972 | 1:22,948,331-22,949,806 | + | C1H1g12410 | C2H1g05127 | LOC_Os01g45110 | Os01g0638000 | - | Detail |
| CX1g005242 | 1:22,967,756-22,969,246 | + | C1H1g11199 | C2H1g05127 | LOC_Os01g45140 | Os01g0638600 | UGT703A1 | Detail |
| CX1g000810 | 1:22,971,160-22,972,330 | - | C1H1g29459 | C2H1g21172 | - | Os01g0748150 | - | Detail |
| CX1g003936 | 1:22,974,875-22,975,069 | + | - | - | - | - | - | Detail |
| CX1g003479 | 1:22,990,292-22,990,912 | + | C1H1g25999 | C2H1g07012 | LOC_Os01g45160 | Os01g0638800 | - | Detail |
| CX1g000740 | 1:23,000,750-23,003,954 | + | C1H1g28061 | C2H1g28691 | LOC_Os01g45190 | Os01g0639100 | OsRH2 | Detail |
| CX1g002505 | 1:23,004,685-23,010,620 | - | C1H1g08315 | C2H1g30211 | LOC_Os01g45200 | Os01g0639200 | Snl6 | Detail |
| CX1g001980 | 1:23,035,855-23,036,604 | + | - | - | LOC_Os01g45250 | Os01g0639600 | - | Detail |
| CX1g002383 | 1:23,047,238-23,055,345 | + | C1H1g11479 | C2H1g17536 | LOC_Os01g45274 | Os01g0639900 | BETACA1, OsβCA1, OsbCA1 | Detail |