| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H2g29020 | 2:2,983,838-2,987,891 | + | C2H2g02325 | CX2g020211 | LOC_Os02g06840 | Os02g0164300 | - | Detail |
| C1H2g05801 | 2:2,988,629-2,989,015 | + | - | CX2g024303 | LOC_Os02g06850 | Os02g0164400 | - | Detail |
| C1H2g26363 | 2:2,991,045-2,992,478 | + | C2H2g03881 | CX2g020340 | LOC_Os02g06880 | Os02g0164600 | - | Detail |
| C1H2g28782 | 2:2,995,822-3,000,056 | + | C2H2g20227 | - | - | - | - | Detail |
| C1H2g28915 | 2:3,000,909-3,004,314 | + | C2H2g15390 | CX2g019807 | LOC_Os02g06890 | Os02g0164800 | - | Detail |
| C1H2g10142 | 2:3,020,962-3,027,137 | + | C2H2g08844 | CX2g021570 | LOC_Os02g06910 | Os02g0164900 | - | Detail |
| C1H2g17118 | 2:3,029,148-3,034,407 | - | C2H2g20692 | CX2g021601 | LOC_Os02g06920 | Os02g0165000 | - | Detail |
| C1H2g01650 | 2:3,038,690-3,041,240 | + | C2H2g16079 | CX2g019152 | LOC_Os02g06930 | Os02g0165100 | - | Detail |
| C1H2g25497 | 2:3,071,213-3,072,418 | + | - | CX2g023265 | LOC_Os02g06960 | Os02g0165500 | - | Detail |
| C1H2g09523 | 2:3,077,157-3,077,474 | + | - | CX2g020036 | LOC_Os02g06970 | Os02g0165800 | - | Detail |
| C1H2g17090 | 2:3,086,899-3,087,102 | + | - | CX2g024460 | - | Os02g0166501 | - | Detail |
| C1H2g26908 | 2:3,116,308-3,117,114 | + | C2H2g27172 | CX2g020929 | LOC_Os02g07030 | Os02g0166800 | OsG1L1 | Detail |
| C1H2g23632 | 2:3,128,859-3,132,260 | + | C2H2g27607 | CX2g024294 | LOC_Os02g07040 | Os02g0167000 | - | Detail |
| C1H2g16723 | 2:3,133,206-3,135,820 | + | C2H2g29468 | CX2g019411 | LOC_Os02g07044 | Os02g0167100 | - | Detail |
| C1H2g08635 | 2:3,136,812-3,139,223 | - | C2H2g15470 | CX2g024870 | LOC_Os02g07050 | Os02g0167200 | SOP10 | Detail |
| C1H2g27502 | 2:3,142,094-3,145,016 | + | C2H2g18240 | CX2g022042 | LOC_Os02g07060 | Os02g0167300 | - | Detail |
| C1H2g31793 | 2:3,146,220-3,154,078 | - | C2H2g24332 | CX2g021350 | LOC_Os02g07070 | Os02g0167500 | LowAC1 | Detail |
| C1H2g24765 | 2:3,178,439-3,178,810 | + | C2H2g21001 | CX2g022899 | LOC_Os02g07110 | Os02g0445100 | - | Detail |
| C1H2g25293 | 2:3,182,675-3,192,671 | - | C2H2g11696 | CX2g021417 | LOC_Os02g07120 | Os02g0167700 | OsCAND1 | Detail |
| C1H2g26186 | 2:3,197,574-3,198,347 | + | - | CX2g018859 | LOC_Os02g07150 | Os02g0168000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g003750 | 1:22,868,342-22,870,363 | + | C1H1g02990 | C2H1g02801 | LOC_Os01g44360 | Os01g0634900 | - | Detail |
| CX1g004521 | 1:22,878,204-22,878,488 | + | C1H1g22221 | C2H1g02642 | LOC_Os01g44370 | Os01g0635000 | - | Detail |
| CX1g004179 | 1:22,883,745-22,884,047 | + | C1H1g22221 | C2H1g02642 | LOC_Os01g44390 | Os01g0635200 | - | Detail |
| CX1g001073 | 1:22,887,327-22,890,691 | + | C1H1g03527 | C2H1g14029 | LOC_Os01g44394 | Os01g0635400 | - | Detail |
| CX1g002888 | 1:22,896,869-22,897,573 | - | C1H5g28773 | - | LOC_Os01g44430 | Os01g0635550 | - | Detail |
| CX1g005715 | 1:22,905,026-22,905,343 | + | - | - | - | Os01g0635800 | - | Detail |
| CX1g000864 | 1:22,915,705-22,917,252 | - | C1H5g00625 | - | LOC_Os01g44950 | - | - | Detail |
| CX1g003935 | 1:22,918,716-22,921,006 | - | C1H1g27414 | C2H1g18946 | LOC_Os01g44960 | Os01g0636400 | - | Detail |
| CX1g001605 | 1:22,930,534-22,934,408 | + | C1H1g00331 | C2H1g07403 | LOC_Os01g44970 | Os01g0636500 | - | Detail |
| CX1g007252 | 1:22,936,839-22,939,753 | - | C1H1g13180 | C2H1g22263 | LOC_Os01g44980 | Os01g0637600 | OsPDF1B | Detail |
| CX1g000311 | 1:22,943,367-22,944,213 | + | C1H1g21245 | C2H1g15078 | LOC_Os01g45090 | Os01g0637800 | OsMYB305 | Detail |
| CX1g003972 | 1:22,948,331-22,949,806 | + | C1H1g12410 | C2H1g05127 | LOC_Os01g45110 | Os01g0638000 | - | Detail |
| CX1g005242 | 1:22,967,756-22,969,246 | + | C1H1g11199 | C2H1g05127 | LOC_Os01g45140 | Os01g0638600 | UGT703A1 | Detail |
| CX1g000810 | 1:22,971,160-22,972,330 | - | C1H1g29459 | C2H1g21172 | - | Os01g0748150 | - | Detail |
| CX1g003936 | 1:22,974,875-22,975,069 | + | - | - | - | - | - | Detail |
| CX1g003479 | 1:22,990,292-22,990,912 | + | C1H1g25999 | C2H1g07012 | LOC_Os01g45160 | Os01g0638800 | - | Detail |
| CX1g000740 | 1:23,000,750-23,003,954 | + | C1H1g28061 | C2H1g28691 | LOC_Os01g45190 | Os01g0639100 | OsRH2 | Detail |
| CX1g002505 | 1:23,004,685-23,010,620 | - | C1H1g08315 | C2H1g30211 | LOC_Os01g45200 | Os01g0639200 | Snl6 | Detail |
| CX1g001980 | 1:23,035,855-23,036,604 | + | - | - | LOC_Os01g45250 | Os01g0639600 | - | Detail |
| CX1g002383 | 1:23,047,238-23,055,345 | + | C1H1g11479 | C2H1g17536 | LOC_Os01g45274 | Os01g0639900 | BETACA1, OsβCA1, OsbCA1 | Detail |