| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g31867 | 1:3,355,804-3,359,143 | + | C2H1g14488 | CX1g001175 | LOC_Os01g07950 | Os01g0174900 | - | Detail |
| C1H1g24398 | 1:3,359,730-3,363,725 | - | C2H1g22647 | CX1g003986 | LOC_Os01g07960 | Os01g0175000 | - | Detail |
| C1H1g18087 | 1:3,374,875-3,380,717 | - | C2H1g30617 | CX1g004096 | LOC_Os01g07980 | Os01g0175400 | - | Detail |
| C1H1g05589 | 1:3,384,746-3,389,181 | - | C2H1g23906 | CX1g001976 | LOC_Os01g08020 | Os01g0175600 | BOR2, OsBOR2, OsBOR3 | Detail |
| C1H1g28606 | 1:3,402,750-3,407,351 | - | C2H1g04507 | CX1g006212 | LOC_Os01g08020 | Os01g0175700 | BOR2, OsBOR2, OsBOR3 | Detail |
| C1H1g24276 | 1:3,417,629-3,419,654 | + | C2H1g10547 | CX1g006769 | LOC_Os01g08090 | Os01g0176000 | - | Detail |
| C1H1g30308 | 1:3,420,696-3,422,479 | + | C2H1g11095 | CX1g003023 | LOC_Os01g08100 | Os01g0176100 | - | Detail |
| C1H1g02538 | 1:3,423,536-3,425,537 | + | C2H1g17460 | CX1g005553 | LOC_Os01g08110 | Os01g0176200 | - | Detail |
| C1H1g22640 | 1:3,432,147-3,436,739 | + | C2H1g17877 | CX1g005143 | LOC_Os01g08130 | Os01g0176400 | - | Detail |
| C1H1g06103 | 1:3,436,955-3,440,221 | - | C2H1g05536 | CX1g005306 | LOC_Os01g08150 | Os01g0176500 | - | Detail |
| C1H1g20288 | 1:3,456,019-3,456,207 | + | C2H1g25065 | CX1g006352 | LOC_Os01g08160 | Os01g0176700 | - | Detail |
| C1H1g03923 | 1:3,456,277-3,457,890 | + | C2H1g25065 | CX1g006352 | LOC_Os01g08160 | Os01g0176700 | - | Detail |
| C1H1g31422 | 1:3,465,359-3,466,757 | - | C2H1g06706 | CX1g005369 | LOC_Os01g08180 | Os01g0176900 | - | Detail |
| C1H1g14865 | 1:3,476,824-3,485,228 | + | C2H1g26258 | CX1g004627 | LOC_Os01g08190 | Os01g0177100 | - | Detail |
| C1H1g25960 | 1:3,487,096-3,495,960 | + | C2H1g16195 | CX1g003518 | LOC_Os01g08200 | Os01g0177200 | - | Detail |
| C1H1g22558 | 1:3,504,929-3,506,165 | - | C2H1g03295 | CX1g003748 | LOC_Os01g08220 | Os01g0177400 | D18, d18-h (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, GA3ox-2 | Detail |
| C1H1g04757 | 1:3,538,810-3,548,613 | - | C2H1g12398 | CX1g004229 | LOC_Os01g08260 | Os01g0177900 | - | Detail |
| C1H1g28750 | 1:3,557,094-3,562,085 | - | C2H1g19074 | CX1g004531 | LOC_Os01g08270 | Os01g0178000 | - | Detail |
| C1H1g30727 | 1:3,563,709-3,567,504 | + | C2H1g18970 | CX1g004172 | LOC_Os01g08280 | Os01g0178100 | - | Detail |
| C1H1g15139 | 1:3,568,178-3,570,121 | + | C2H1g21666 | CX1g001768 | LOC_Os01g08290 | Os01g0178200 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g003750 | 1:22,868,342-22,870,363 | + | C1H1g02990 | C2H1g02801 | LOC_Os01g44360 | Os01g0634900 | - | Detail |
| CX1g004521 | 1:22,878,204-22,878,488 | + | C1H1g22221 | C2H1g02642 | LOC_Os01g44370 | Os01g0635000 | - | Detail |
| CX1g004179 | 1:22,883,745-22,884,047 | + | C1H1g22221 | C2H1g02642 | LOC_Os01g44390 | Os01g0635200 | - | Detail |
| CX1g001073 | 1:22,887,327-22,890,691 | + | C1H1g03527 | C2H1g14029 | LOC_Os01g44394 | Os01g0635400 | - | Detail |
| CX1g002888 | 1:22,896,869-22,897,573 | - | C1H5g28773 | - | LOC_Os01g44430 | Os01g0635550 | - | Detail |
| CX1g005715 | 1:22,905,026-22,905,343 | + | - | - | - | Os01g0635800 | - | Detail |
| CX1g000864 | 1:22,915,705-22,917,252 | - | C1H5g00625 | - | LOC_Os01g44950 | - | - | Detail |
| CX1g003935 | 1:22,918,716-22,921,006 | - | C1H1g27414 | C2H1g18946 | LOC_Os01g44960 | Os01g0636400 | - | Detail |
| CX1g001605 | 1:22,930,534-22,934,408 | + | C1H1g00331 | C2H1g07403 | LOC_Os01g44970 | Os01g0636500 | - | Detail |
| CX1g007252 | 1:22,936,839-22,939,753 | - | C1H1g13180 | C2H1g22263 | LOC_Os01g44980 | Os01g0637600 | OsPDF1B | Detail |
| CX1g000311 | 1:22,943,367-22,944,213 | + | C1H1g21245 | C2H1g15078 | LOC_Os01g45090 | Os01g0637800 | OsMYB305 | Detail |
| CX1g003972 | 1:22,948,331-22,949,806 | + | C1H1g12410 | C2H1g05127 | LOC_Os01g45110 | Os01g0638000 | - | Detail |
| CX1g005242 | 1:22,967,756-22,969,246 | + | C1H1g11199 | C2H1g05127 | LOC_Os01g45140 | Os01g0638600 | UGT703A1 | Detail |
| CX1g000810 | 1:22,971,160-22,972,330 | - | C1H1g29459 | C2H1g21172 | - | Os01g0748150 | - | Detail |
| CX1g003936 | 1:22,974,875-22,975,069 | + | - | - | - | - | - | Detail |
| CX1g003479 | 1:22,990,292-22,990,912 | + | C1H1g25999 | C2H1g07012 | LOC_Os01g45160 | Os01g0638800 | - | Detail |
| CX1g000740 | 1:23,000,750-23,003,954 | + | C1H1g28061 | C2H1g28691 | LOC_Os01g45190 | Os01g0639100 | OsRH2 | Detail |
| CX1g002505 | 1:23,004,685-23,010,620 | - | C1H1g08315 | C2H1g30211 | LOC_Os01g45200 | Os01g0639200 | Snl6 | Detail |
| CX1g001980 | 1:23,035,855-23,036,604 | + | - | - | LOC_Os01g45250 | Os01g0639600 | - | Detail |
| CX1g002383 | 1:23,047,238-23,055,345 | + | C1H1g11479 | C2H1g17536 | LOC_Os01g45274 | Os01g0639900 | BETACA1, OsβCA1, OsbCA1 | Detail |