| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g20574 | 3:9,329,178-9,330,089 | - | C2H3g09178 | CX3g025577 | LOC_Os03g18770 | Os03g0299600 | - | Detail |
| C1H3g08338 | 3:9,337,998-9,342,845 | - | C2H3g30408 | CX3g025927 | LOC_Os03g18790 | Os03g0299800 | - | Detail |
| C1H3g29390 | 3:9,349,800-9,353,092 | + | C2H3g01680 | CX3g025303 | LOC_Os03g18810 | Os03g0299900 | - | Detail |
| C1H3g08396 | 3:9,354,500-9,355,846 | - | C2H3g29698 | CX3g025517 | LOC_Os03g18820 | Os03g0300000 | - | Detail |
| C1H3g18508 | 3:9,358,745-9,363,101 | - | C2H3g28163 | CX3g030992 | LOC_Os03g18830 | Os03g0300200 | - | Detail |
| C1H3g23407 | 3:9,363,130-9,368,923 | + | C2H3g21841 | CX3g030790 | LOC_Os03g18840 | Os03g0300300 | - | Detail |
| C1H3g17735 | 3:9,369,635-9,370,688 | + | C2H3g29151 | CX3g027983 | LOC_Os03g18850 | Os03g0300400 | JIOsPR10 | Detail |
| C1H3g06825 | 3:9,372,739-9,374,436 | - | C2H3g16892 | CX3g030884 | LOC_Os03g18860 | Os03g0300500 | - | Detail |
| C1H3g14250 | 3:9,378,512-9,379,460 | - | C2H3g14772 | CX3g030255 | LOC_Os03g18870 | Os03g0300600 | - | Detail |
| C1H3g00200 | 3:9,382,697-9,383,802 | - | C2H3g30255 | CX3g030501 | LOC_Os03g18880 | Os03g0300700 | - | Detail |
| C1H3g08826 | 3:9,389,647-9,390,753 | + | C2H3g17031 | CX3g028981 | LOC_Os03g18890 | Os03g0300900 | - | Detail |
| C1H3g12713 | 3:9,403,361-9,405,376 | + | C2H3g21070 | CX3g030388 | LOC_Os03g18910 | Os03g0301200 | - | Detail |
| C1H3g28323 | 3:9,411,285-9,417,311 | + | C2H3g13460 | CX3g027587 | LOC_Os03g18940 | Os03g0301400 | - | Detail |
| C1H3g10793 | 3:9,419,559-9,421,572 | + | C2H3g01957 | CX3g029287 | LOC_Os03g18950 | Os03g0301500 | - | Detail |
| C1H3g07825 | 3:9,423,765-9,426,852 | + | C2H3g01576 | CX3g028454 | LOC_Os03g18960 | Os03g0301600 | - | Detail |
| C1H3g28727 | 3:9,427,701-9,431,383 | - | C2H3g21248 | CX3g025125 | LOC_Os03g18970 | Os03g0301700 | - | Detail |
| C1H3g15707 | 3:9,436,895-9,442,990 | - | C2H3g22040 | CX3g025499 | LOC_Os03g18980 | Os03g0301800 | - | Detail |
| C1H3g00497 | 3:9,452,767-9,453,381 | + | C2H3g24219 | CX3g025566 | LOC_Os03g18990 | Os03g0301900 | - | Detail |
| C1H3g25455 | 3:9,456,188-9,456,952 | + | C2H3g19658 | - | LOC_Os03g19000 | Os03g0301950 | PEX11-2, OsPEX11-2, OsPEX11-5 | Detail |
| C1H3g00671 | 3:9,458,395-9,460,800 | + | C2H3g01269 | - | LOC_Os03g19010 | Os03g0302000 | PEX11-3, OsPEX11-3, OsPEX11 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX5g040586 | 5:17,339,722-17,341,022 | - | C1H5g20774 | C2H5g29392 | LOC_Os05g34680 | Os05g0419600 | - | Detail |
| CX5g039248 | 5:17,343,985-17,348,301 | + | C1H5g21437 | C2H5g16335 | LOC_Os05g34700 | Os05g0419800 | - | Detail |
| CX5g039884 | 5:17,349,099-17,349,413 | + | - | - | - | - | - | Detail |
| CX5g039353 | 5:17,355,132-17,357,805 | + | C1H5g23153 | C2H5g10847 | LOC_Os05g34720 | Os05g0420200 | - | Detail |
| CX5g037413 | 5:17,365,645-17,366,484 | - | C1H5g19351 | C2H5g17369 | LOC_Os05g34730 | Os05g0420300 | ERF131, SERF1, OsERF#131, OsERF131, AP2/EREBP#094, AP2/EREBP94 | Detail |
| CX5g038631 | 5:17,372,859-17,373,395 | + | C1H5g05296 | C2H5g22490 | LOC_Os05g27490 | Os07g0631500 | - | Detail |
| CX5g040333 | 5:17,380,266-17,386,068 | + | C1H5g00420 | C2H5g20050 | LOC_Os05g34760 | Os05g0420500 | - | Detail |
| CX5g039680 | 5:17,387,411-17,389,588 | + | C1H5g20696 | C2H5g06562 | LOC_Os05g34770 | Os05g0420600 | - | Detail |
| CX5g039117 | 5:17,393,001-17,393,252 | + | - | - | - | - | - | Detail |
| CX5g039405 | 5:17,394,127-17,394,303 | - | - | - | - | - | - | Detail |
| CX5g038496 | 5:17,395,200-17,403,579 | + | C1H1g14405 | C2H5g12654 | LOC_Os05g34790 | Os05g0421000 | - | Detail |
| CX5g037173 | 5:17,407,050-17,407,619 | + | C1H5g14092 | C2H5g20791 | LOC_Os05g34810 | Os05g0421100 | - | Detail |
| CX5g038029 | 5:17,413,899-17,416,174 | + | C1H5g19992 | C2H5g00178 | LOC_Os05g34820 | Os05g0421300 | - | Detail |
| CX5g039797 | 5:17,426,420-17,428,031 | + | C1H5g29371 | C2H5g17032 | LOC_Os05g34830 | Os05g0421600 | - | Detail |
| CX5g038325 | 5:17,440,087-17,440,904 | + | C1H7g20360 | C2H7g10129 | LOC_Os05g28120 | - | - | Detail |
| CX5g038815 | 5:17,441,900-17,448,200 | - | C1H5g12253 | C2H5g09186 | LOC_Os05g34854 | Os05g0421900 | Prl5, OsGA20ox4, GA20ox4 | Detail |
| CX5g038799 | 5:17,471,406-17,475,859 | - | C1H5g11306 | C2H5g24092 | LOC_Os05g34880 | Os05g0422300 | - | Detail |
| CX5g038432 | 5:17,478,784-17,486,136 | - | C1H5g25911 | C2H5g03824 | LOC_Os05g34900 | Os05g0422600 | - | Detail |
| CX5g039497 | 5:17,488,206-17,492,755 | + | C1H5g25030 | C2H5g16658 | LOC_Os05g34920 | Os05g0423200 | - | Detail |
| CX5g037692 | 5:17,496,127-17,498,083 | + | C1H5g31746 | C2H5g05490 | LOC_Os05g34940 | Os05g0423400 | OsMADS4 | Detail |