| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g22396 | 3:7,108,898-7,109,449 | - | C2H3g07197 | CX3g030425 | - | - | - | Detail |
| C1H3g11496 | 3:7,113,752-7,114,810 | - | C2H3g07863 | CX3g028408 | LOC_Os03g14730 | Os03g0252100 | DIP12, OsDIP12 | Detail |
| C1H3g20834 | 3:7,144,714-7,145,296 | + | C2H3g09632 | CX3g025353 | LOC_Os03g14790 | - | - | Detail |
| C1H3g27328 | 3:7,145,872-7,149,486 | + | C2H3g26671 | CX3g025353 | LOC_Os03g14790 | Os03g0682200 | - | Detail |
| C1H3g10342 | 3:7,151,431-7,156,722 | - | C2H3g27873 | CX3g029321 | LOC_Os03g14800 | Os03g0252800 | - | Detail |
| C1H3g03427 | 3:7,161,182-7,161,757 | - | C2H3g05415 | CX3g026810 | LOC_Os03g14810 | Os03g0252900 | - | Detail |
| C1H3g13989 | 3:7,167,783-7,173,515 | - | C2H3g20389 | CX3g025241 | - | Os03g0253100 | - | Detail |
| C1H3g21796 | 3:7,182,060-7,183,592 | + | C2H3g29944 | CX3g029104 | LOC_Os03g14840 | Os03g0253200 | - | Detail |
| C1H3g30447 | 3:7,197,443-7,198,741 | - | C2H3g07742 | CX3g029003 | LOC_Os03g14860 | Os03g0253500 | - | Detail |
| C1H3g10348 | 3:7,202,134-7,203,147 | - | C2H3g06446 | CX3g028867 | LOC_Os03g14880 | Os03g0253600 | - | Detail |
| C1H3g02049 | 3:7,218,395-7,223,525 | - | C2H3g06821 | - | LOC_Os03g14890 | Os03g0253800 | - | Detail |
| C1H3g17610 | 3:7,225,568-7,229,374 | - | C2H3g12053 | CX3g029243 | LOC_Os03g14900 | Os03g0254000 | - | Detail |
| C1H3g15353 | 3:7,232,363-7,234,224 | + | C2H3g19284 | CX3g028413 | LOC_Os03g14910 | Os03g0254200 | - | Detail |
| C1H3g13729 | 3:7,235,215-7,235,989 | + | C2H3g17074 | CX3g025235 | LOC_Os03g14915 | - | - | Detail |
| C1H3g15012 | 3:7,246,382-7,248,584 | + | C2H3g07624 | CX3g027887 | LOC_Os03g14950 | Os03g0254400 | - | Detail |
| C1H3g14658 | 3:7,253,101-7,253,379 | - | C2H3g23799 | CX3g029818 | - | - | - | Detail |
| C1H3g26948 | 3:7,257,504-7,267,353 | - | C2H3g04070 | - | - | - | - | Detail |
| C1H3g12429 | 3:7,269,834-7,273,697 | - | C2H3g05698 | CX3g030250 | LOC_Os03g14990 | Os03g0254800 | - | Detail |
| C1H3g29260 | 3:7,274,188-7,278,418 | - | C2H3g27981 | CX3g028925 | LOC_Os03g15000 | Os03g0254900 | - | Detail |
| C1H3g29943 | 3:7,284,805-7,287,831 | + | C2H3g19768 | CX3g027619 | LOC_Os03g15010 | Os03g0255000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX5g040586 | 5:17,339,722-17,341,022 | - | C1H5g20774 | C2H5g29392 | LOC_Os05g34680 | Os05g0419600 | - | Detail |
| CX5g039248 | 5:17,343,985-17,348,301 | + | C1H5g21437 | C2H5g16335 | LOC_Os05g34700 | Os05g0419800 | - | Detail |
| CX5g039884 | 5:17,349,099-17,349,413 | + | - | - | - | - | - | Detail |
| CX5g039353 | 5:17,355,132-17,357,805 | + | C1H5g23153 | C2H5g10847 | LOC_Os05g34720 | Os05g0420200 | - | Detail |
| CX5g037413 | 5:17,365,645-17,366,484 | - | C1H5g19351 | C2H5g17369 | LOC_Os05g34730 | Os05g0420300 | ERF131, SERF1, OsERF#131, OsERF131, AP2/EREBP#094, AP2/EREBP94 | Detail |
| CX5g038631 | 5:17,372,859-17,373,395 | + | C1H5g05296 | C2H5g22490 | LOC_Os05g27490 | Os07g0631500 | - | Detail |
| CX5g040333 | 5:17,380,266-17,386,068 | + | C1H5g00420 | C2H5g20050 | LOC_Os05g34760 | Os05g0420500 | - | Detail |
| CX5g039680 | 5:17,387,411-17,389,588 | + | C1H5g20696 | C2H5g06562 | LOC_Os05g34770 | Os05g0420600 | - | Detail |
| CX5g039117 | 5:17,393,001-17,393,252 | + | - | - | - | - | - | Detail |
| CX5g039405 | 5:17,394,127-17,394,303 | - | - | - | - | - | - | Detail |
| CX5g038496 | 5:17,395,200-17,403,579 | + | C1H1g14405 | C2H5g12654 | LOC_Os05g34790 | Os05g0421000 | - | Detail |
| CX5g037173 | 5:17,407,050-17,407,619 | + | C1H5g14092 | C2H5g20791 | LOC_Os05g34810 | Os05g0421100 | - | Detail |
| CX5g038029 | 5:17,413,899-17,416,174 | + | C1H5g19992 | C2H5g00178 | LOC_Os05g34820 | Os05g0421300 | - | Detail |
| CX5g039797 | 5:17,426,420-17,428,031 | + | C1H5g29371 | C2H5g17032 | LOC_Os05g34830 | Os05g0421600 | - | Detail |
| CX5g038325 | 5:17,440,087-17,440,904 | + | C1H7g20360 | C2H7g10129 | LOC_Os05g28120 | - | - | Detail |
| CX5g038815 | 5:17,441,900-17,448,200 | - | C1H5g12253 | C2H5g09186 | LOC_Os05g34854 | Os05g0421900 | Prl5, OsGA20ox4, GA20ox4 | Detail |
| CX5g038799 | 5:17,471,406-17,475,859 | - | C1H5g11306 | C2H5g24092 | LOC_Os05g34880 | Os05g0422300 | - | Detail |
| CX5g038432 | 5:17,478,784-17,486,136 | - | C1H5g25911 | C2H5g03824 | LOC_Os05g34900 | Os05g0422600 | - | Detail |
| CX5g039497 | 5:17,488,206-17,492,755 | + | C1H5g25030 | C2H5g16658 | LOC_Os05g34920 | Os05g0423200 | - | Detail |
| CX5g037692 | 5:17,496,127-17,498,083 | + | C1H5g31746 | C2H5g05490 | LOC_Os05g34940 | Os05g0423400 | OsMADS4 | Detail |