| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H5g11504 | 5:3,649,274-3,649,921 | + | C2H5g21158 | CX5g039717 | LOC_Os05g07890 | Os05g0171200 | - | Detail |
| C1H5g14842 | 5:3,653,044-3,656,701 | + | C2H5g11975 | CX5g038572 | LOC_Os05g07900 | Os05g0171300 | - | Detail |
| C1H5g05810 | 5:3,669,433-3,674,100 | + | C2H5g28875 | CX5g040454 | LOC_Os05g07940 | Os05g0171900 | - | Detail |
| C1H5g06487 | 5:3,679,246-3,680,409 | - | C2H5g13205 | CX5g040831 | LOC_Os05g08010 | Os05g0172500 | - | Detail |
| C1H5g09811 | 5:3,682,475-3,683,767 | - | C2H5g23308 | CX5g040831 | LOC_Os05g07960 | Os05g0172100 | - | Detail |
| C1H5g28743 | 5:3,687,610-3,692,840 | - | C2H5g03657 | CX5g037090 | LOC_Os05g07980 | Os05g0172300 | - | Detail |
| C1H5g08333 | 5:3,696,830-3,700,752 | - | C2H5g03936 | CX5g038351 | LOC_Os05g08010 | Os05g0172500 | - | Detail |
| C1H5g18279 | 5:3,712,708-3,714,180 | + | - | CX5g038912 | - | - | - | Detail |
| C1H5g27827 | 5:3,717,017-3,719,965 | + | C2H5g07835 | CX5g040996 | LOC_Os05g08360 | Os05g0176000 | - | Detail |
| C1H5g22753 | 5:3,723,671-3,729,931 | - | C2H5g15897 | CX5g038136 | LOC_Os05g08370 | Os05g0176100 | - | Detail |
| C1H5g02275 | 5:3,739,188-3,741,590 | - | C2H5g24531 | CX5g040050 | LOC_Os05g08400 | Os05g0176400 | - | Detail |
| C1H5g15996 | 5:3,743,300-3,746,440 | - | C2H5g15763 | CX5g039063 | LOC_Os05g08410 | Os05g0176500 | - | Detail |
| C1H5g19736 | 5:3,746,652-3,749,108 | + | C2H5g16673 | CX5g039906 | LOC_Os05g08414 | Os05g0176600 | - | Detail |
| C1H5g07740 | 5:3,759,704-3,768,730 | - | C2H5g23491 | CX5g039146 | LOC_Os05g08430 | Os05g0176800 | BOR4, OsBOR4 | Detail |
| C1H5g26361 | 5:3,790,553-3,792,332 | + | C2H5g22969 | CX5g040267 | LOC_Os05g08450 | Os05g0177100 | - | Detail |
| C1H5g11821 | 5:3,800,983-3,803,223 | - | C2H5g14876 | CX5g040267 | LOC_Os05g08460 | Os05g0177400 | - | Detail |
| C1H5g18386 | 5:3,803,309-3,803,629 | - | C2H5g00540 | - | - | - | - | Detail |
| C1H5g12562 | 5:3,812,648-3,816,213 | + | C2H5g23095 | CX5g040475 | LOC_Os05g08490 | Os05g0177800 | - | Detail |
| C1H5g05273 | 5:3,823,371-3,828,084 | + | C2H5g03109 | CX5g039674 | LOC_Os05g08530 | Os05g0178000 | - | Detail |
| C1H5g26746 | 5:3,830,915-3,831,382 | - | C2H5g08820 | CX5g040319 | LOC_Os05g08540 | Os05g0178100 | GA3OX1, OsGA3ox1, GA3ox1, OsGA3OX1 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX5g040810 | 5:17,165,959-17,169,802 | + | C1H5g18533 | C2H5g04891 | LOC_Os05g34330 | Os05g0415900 | - | Detail |
| CX5g039838 | 5:17,195,679-17,197,664 | - | C1H5g01316 | C2H5g12818 | LOC_Os05g34450 | Os05g0417000 | - | Detail |
| CX5g037706 | 5:17,201,341-17,201,736 | - | - | - | LOC_Os05g34140 | - | - | Detail |
| CX5g038947 | 5:17,212,583-17,217,753 | + | C1H5g11798 | C2H5g07004 | LOC_Os05g34460 | Os05g0417100 | OsDeg10, OsDegP7, TCM5 | Detail |
| CX5g039768 | 5:17,218,832-17,220,259 | + | C1H5g00545 | C2H5g04759 | LOC_Os05g34470 | Os05g0417200 | - | Detail |
| CX5g039015 | 5:17,223,597-17,223,749 | + | C1H4g29914 | C2H4g28812 | - | - | - | Detail |
| CX5g036958 | 5:17,224,438-17,227,201 | + | C1H5g02957 | C2H5g08539 | LOC_Os05g34480 | Os05g0417300 | - | Detail |
| CX5g039968 | 5:17,233,642-17,233,992 | + | C1H5g23511 | C2H5g04823 | LOC_Os05g34500 | Os05g0417600 | - | Detail |
| CX5g037235 | 5:17,235,489-17,235,806 | + | C1H5g30645 | C2H5g22148 | LOC_Os05g34510 | Os05g0417700 | - | Detail |
| CX5g037225 | 5:17,241,529-17,241,840 | - | C1H5g05293 | C2H5g07813 | LOC_Os05g34530 | Os05g0417900 | - | Detail |
| CX5g039245 | 5:17,248,920-17,253,565 | + | C1H5g17144 | C2H5g11479 | LOC_Os05g34540 | Os05g0418000 | OsGDI1 | Detail |
| CX5g037350 | 5:17,256,499-17,261,370 | - | C1H5g20306 | C2H5g09394 | LOC_Os05g34550 | Os05g0418100 | - | Detail |
| CX5g038596 | 5:17,270,219-17,272,037 | - | C1H5g09296 | C2H5g30520 | LOC_Os05g34570 | Os05g0418500 | - | Detail |
| CX5g041058 | 5:17,278,093-17,278,257 | - | - | - | - | - | - | Detail |
| CX5g037191 | 5:17,279,678-17,282,007 | - | C1H5g19185 | C2H5g00424 | LOC_Os05g34600 | Os05g0418800 | - | Detail |
| CX5g037281 | 5:17,292,516-17,295,827 | - | C1H5g01087 | C2H5g04546 | LOC_Os05g34630 | Os05g0419000 | - | Detail |
| CX5g038692 | 5:17,298,728-17,302,877 | + | C1H5g10579 | C2H5g19079 | LOC_Os05g34640 | Os05g0419100 | OsAL5 | Detail |
| CX5g040441 | 5:17,304,911-17,309,064 | - | C1H5g24431 | C2H5g20412 | LOC_Os05g34650 | Os05g0419200 | - | Detail |
| CX5g038818 | 5:17,326,502-17,330,289 | - | C1H5g12812 | C2H5g19507 | LOC_Os05g34670 | Os05g0419500 | - | Detail |
| CX5g038250 | 5:17,335,974-17,336,162 | + | - | - | - | - | - | Detail |