| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g30819 | 3:8,770,141-8,774,526 | + | C2H3g05135 | CX3g029393 | LOC_Os03g17740 | Os03g0286300 | - | Detail |
| C1H3g23357 | 3:8,776,012-8,778,687 | - | C2H3g11924 | CX3g028814 | LOC_Os03g17760 | Os03g0286500 | - | Detail |
| C1H3g16747 | 3:8,787,399-8,790,131 | + | C2H3g28874 | CX3g028365 | LOC_Os03g17780 | Os03g0286800 | - | Detail |
| C1H3g27086 | 3:8,791,690-8,791,976 | - | C2H3g08715 | CX3g026690 | LOC_Os03g17790 | Os03g0286900 | OsRCI2-5 | Detail |
| C1H3g29184 | 3:8,795,155-8,797,094 | - | C2H3g22847 | CX3g030677 | LOC_Os03g17800 | Os03g0287100 | OsPITPα, OsPITPalpha | Detail |
| C1H3g05095 | 3:8,804,615-8,805,433 | - | C2H3g20359 | CX3g026247 | LOC_Os03g17810 | Os03g0287400 | - | Detail |
| C1H3g02097 | 3:8,819,749-8,825,527 | + | C2H3g27675 | CX3g029968 | LOC_Os03g17840 | Os03g0287700 | - | Detail |
| C1H3g16177 | 3:8,830,806-8,835,037 | + | C2H3g09757 | CX3g025194 | LOC_Os03g17850 | Os03g0287800 | OsGT43B | Detail |
| C1H3g12393 | 3:8,837,212-8,839,228 | - | C2H3g14774 | CX3g027864 | LOC_Os03g17860 | Os03g0287900 | - | Detail |
| C1H3g31312 | 3:8,841,681-8,842,370 | + | C2H3g27564 | CX3g028664 | LOC_Os03g17870 | Os03g0288000 | - | Detail |
| C1H3g00118 | 3:8,849,777-8,854,775 | + | C2H3g23362 | CX3g028015 | LOC_Os03g17900 | Os03g0288300 | - | Detail |
| C1H3g25481 | 3:8,856,043-8,858,066 | + | C2H3g17267 | CX3g026722 | LOC_Os03g17910 | Os03g0288400 | - | Detail |
| C1H3g14781 | 3:8,858,426-8,861,725 | + | C2H3g21876 | CX3g027011 | LOC_Os03g17920 | Os03g0288500 | - | Detail |
| C1H3g27293 | 3:8,864,540-8,867,759 | + | C2H3g27997 | CX3g030831 | LOC_Os03g17930 | Os03g0288600 | - | Detail |
| C1H3g19930 | 3:8,868,689-8,870,597 | - | C2H3g11409 | CX3g027560 | LOC_Os03g17940 | Os03g0288700 | - | Detail |
| C1H3g10814 | 3:8,872,487-8,876,594 | + | C2H3g03519 | CX3g029037 | LOC_Os03g17950 | Os03g0288800 | - | Detail |
| C1H3g03942 | 3:8,876,970-8,879,480 | + | C2H3g04708 | CX3g026332 | LOC_Os03g17960 | Os03g0288900 | - | Detail |
| C1H3g28173 | 3:8,884,078-8,889,386 | + | C2H3g30489 | CX3g025870 | LOC_Os03g17980 | Os03g0289100 | - | Detail |
| C1H3g16506 | 3:8,893,468-8,895,978 | + | C2H3g00076 | CX3g029623 | LOC_Os03g17990 | Os03g0289200 | - | Detail |
| C1H3g21351 | 3:8,899,345-8,902,878 | + | C2H3g12597 | CX3g025090 | LOC_Os03g18010 | Os03g0289300 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX5g038802 | 5:16,800,828-16,808,564 | + | C1H5g18086 | C2H5g11444 | LOC_Os05g33810 | Os05g0408200 | OsSPL9 | Detail |
| CX5g040901 | 5:16,811,186-16,813,935 | - | C1H5g22231 | C2H5g22366 | LOC_Os05g33820 | Os05g0408300 | - | Detail |
| CX5g037586 | 5:16,817,187-16,817,345 | + | - | - | - | - | - | Detail |
| CX5g041111 | 5:16,822,164-16,824,139 | - | - | - | - | - | - | Detail |
| CX5g037819 | 5:16,830,530-16,831,408 | - | C1H5g07753 | C2H5g14510 | LOC_Os05g33830 | Os05g0408800 | - | Detail |
| CX5g037932 | 5:16,833,965-16,834,515 | - | C1H5g01736 | C2H5g20401 | LOC_Os05g33910 | Os01g0162101 | - | Detail |
| CX5g039038 | 5:16,835,165-16,840,740 | - | C1H5g28806 | C2H5g21665 | LOC_Os05g33840 | Os05g0408900 | - | Detail |
| CX5g040687 | 5:16,848,670-16,852,861 | - | C1H5g13458 | C2H5g22578 | LOC_Os05g33850 | Os05g0409000 | - | Detail |
| CX5g036877 | 5:16,856,501-16,857,487 | + | C1H5g23907 | C2H5g22810 | LOC_Os05g33860 | Os05g0409100 | - | Detail |
| CX5g038152 | 5:16,864,787-16,866,030 | + | C1H5g25708 | C2H5g14027 | LOC_Os05g33870 | Os05g0409200 | - | Detail |
| CX5g038053 | 5:16,867,421-16,870,790 | + | C1H5g10361 | C2H5g06598 | LOC_Os05g33880 | Os05g0409300 | - | Detail |
| CX5g040809 | 5:16,872,672-16,877,520 | + | C1H5g20921 | C2H5g24418 | LOC_Os05g33890 | Os05g0409400 | MAP65-5 | Detail |
| CX5g041144 | 5:16,881,705-16,883,663 | - | C1H5g09074 | C2H5g11844 | LOC_Os05g33900 | Os05g0409500 | - | Detail |
| CX5g036697 | 5:16,894,309-16,894,494 | - | - | - | - | - | - | Detail |
| CX5g038765 | 5:16,909,840-16,910,740 | - | - | - | - | - | - | Detail |
| CX5g037035 | 5:16,910,815-16,912,020 | + | C1H5g30333 | C2H5g23232 | LOC_Os05g33920 | Os05g0409800 | - | Detail |
| CX5g037287 | 5:16,922,109-16,923,161 | + | C1H5g08005 | C2H5g30472 | LOC_Os05g33940 | Os05g0410200 | - | Detail |
| CX5g040712 | 5:16,932,191-16,936,870 | - | C1H5g00588 | C2H5g17136 | LOC_Os05g33960 | Os05g0410500 | - | Detail |
| CX5g037111 | 5:16,949,814-16,951,708 | + | C1H5g18824 | C2H5g01676 | LOC_Os05g33960 | Os05g0410800 | - | Detail |
| CX5g036792 | 5:16,952,093-16,955,941 | - | C1H5g09032 | C2H5g07639 | LOC_Os05g34010 | Os05g0410900 | - | Detail |