| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g03283 | 3:31,750,330-31,751,957 | - | C1H3g12556 | CX3g030607 | LOC_Os03g61270 | Os03g0828300 | - | Detail |
| C2H3g18546 | 3:31,757,601-31,759,139 | - | C1H3g04822 | CX3g029024 | LOC_Os03g61260 | Os03g0828100 | OsPRPL18 | Detail |
| C2H3g08381 | 3:31,762,816-31,765,445 | - | C1H3g26131 | CX3g026632 | LOC_Os03g61330 | Os03g0829000 | - | Detail |
| C2H3g25590 | 3:31,766,052-31,768,641 | - | C1H3g15915 | CX3g028011 | LOC_Os03g61340 | Os03g0829100 | - | Detail |
| C2H3g24696 | 3:31,769,426-31,772,607 | - | C1H3g03162 | CX3g026642 | LOC_Os03g61360 | Os03g0829200 | - | Detail |
| C2H3g26698 | 3:31,770,274-31,770,820 | + | C1H3g09916 | CX3g030512 | LOC_Os03g64340 | Os03g0829466 | - | Detail |
| C2H3g05880 | 3:31,778,758-31,779,428 | - | C1H3g23073 | CX3g025854 | LOC_Os03g61470 | Os03g0830400 | - | Detail |
| C2H3g17673 | 3:31,782,442-31,783,339 | - | C1H3g23073 | CX3g025854 | LOC_Os03g61440 | Os03g0829900 | OsFWL4 | Detail |
| C2H3g24444 | 3:31,786,174-31,791,693 | + | C1H10g15679 | - | - | - | - | Detail |
| C2H3g04636 | 3:31,793,778-31,794,478 | - | C1H3g07645 | CX3g025854 | LOC_Os03g61470 | Os03g0830200 | OsCNR10 | Detail |
| C2H3g11706 | 3:31,795,469-31,796,771 | + | C1H3g06410 | CX3g028250 | - | Os03g0206700 | - | Detail |
| C2H3g19882 | 3:31,800,078-31,803,074 | - | C1H3g25802 | CX3g026525 | LOC_Os03g61500 | Os03g0830400 | - | Detail |
| C2H3g03602 | 3:31,803,385-31,803,961 | - | C1H3g25802 | CX3g025854 | LOC_Os03g61470 | Os03g0830400 | - | Detail |
| C2H3g26647 | 3:31,805,366-31,805,719 | - | C1H3g23073 | CX3g025854 | LOC_Os03g61500 | Os03g0830400 | - | Detail |
| C2H3g22051 | 3:31,810,910-31,811,562 | - | C1H3g28428 | CX3g025854 | LOC_Os03g61500 | Os03g0830500 | OsFWL7 | Detail |
| C2H3g06697 | 3:31,818,779-31,823,973 | - | C1H3g03284 | CX3g029618 | LOC_Os03g61540 | Os03g0830900 | - | Detail |
| C2H3g08869 | 3:31,828,256-31,829,443 | + | C1H3g14942 | CX3g028759 | LOC_Os03g61550 | Os03g0831000 | - | Detail |
| C2H3g09913 | 3:31,829,771-31,835,212 | - | C1H3g25915 | CX3g026737 | LOC_Os03g61560 | Os03g0831100 | - | Detail |
| C2H3g11440 | 3:31,836,649-31,838,057 | + | C1H3g22820 | CX3g028619 | LOC_Os03g61570 | Os03g0831200 | GATA12 | Detail |
| C2H3g03666 | 3:31,841,906-31,845,417 | + | C1H3g04867 | CX3g030545 | LOC_Os03g61580 | Os03g0831300 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002259 | 1:22,666,064-22,666,240 | - | - | - | - | Os09g0414600 | - | Detail |
| CX1g005176 | 1:22,667,269-22,668,669 | + | - | - | LOC_Os01g43940 | Os01g0630200 | - | Detail |
| CX1g000988 | 1:22,672,374-22,672,856 | - | - | - | LOC_Os01g43950 | Os01g0630300 | - | Detail |
| CX1g005159 | 1:22,675,088-22,675,345 | - | - | - | - | - | - | Detail |
| CX1g005258 | 1:22,686,355-22,692,747 | + | C1H1g00799 | C2H1g22336 | LOC_Os01g44040 | Os01g0631100 | - | Detail |
| CX1g002535 | 1:22,694,102-22,696,768 | + | C1H1g26941 | C2H1g25630 | LOC_Os01g44050 | Os01g0631200 | - | Detail |
| CX1g003884 | 1:22,710,116-22,710,523 | - | - | - | - | Os03g0708250 | - | Detail |
| CX1g001624 | 1:22,715,118-22,721,374 | + | C1H1g05926 | C2H1g14517 | LOC_Os01g44069 | Os01g0631400 | - | Detail |
| CX1g000338 | 1:22,728,120-22,729,515 | + | C1H1g08811 | C2H1g24347 | LOC_Os01g44090 | Os01g0631500 | - | Detail |
| CX1g001009 | 1:22,750,806-22,754,179 | + | C1H1g07009 | C2H1g14152 | LOC_Os01g44110 | Os01g0631700 | - | Detail |
| CX1g005012 | 1:22,756,152-22,756,430 | + | - | - | LOC_Os01g44120 | Os01g0631800 | - | Detail |
| CX1g000935 | 1:22,758,917-22,764,310 | + | C1H1g05320 | C2H1g16370 | LOC_Os01g44130 | Os01g0631900 | - | Detail |
| CX1g005415 | 1:22,767,425-22,770,367 | - | C1H5g06864 | - | LOC_Os01g44140 | Os01g0632000 | - | Detail |
| CX1g000578 | 1:22,803,824-22,807,846 | + | C1H1g09519 | C2H1g23506 | LOC_Os01g44220 | Os01g0633100 | AGPL2, OsAGPL2, osagpl2, APL2, OsAPL2, AGPiso, sh2, Sh2 | Detail |
| CX1g004196 | 1:22,810,334-22,813,306 | + | C1H1g25629 | C2H1g25610 | LOC_Os01g44230 | Os01g0633200 | - | Detail |
| CX1g001984 | 1:22,815,148-22,817,588 | + | C1H1g17417 | C2H1g21259 | LOC_Os01g44250 | Os01g0633400 | - | Detail |
| CX1g005798 | 1:22,822,682-22,824,302 | + | C1H1g26792 | C2H1g13154 | LOC_Os01g44260 | Os01g0633500 | Rd, DFR | Detail |
| CX1g002472 | 1:22,828,351-22,835,274 | - | C1H1g26567 | C2H1g30459 | LOC_Os01g44310 | Os01g0634300 | - | Detail |
| CX1g002072 | 1:22,861,487-22,863,474 | - | C1H1g01839 | C2H1g20909 | LOC_Os01g44330 | Os01g0634500 | - | Detail |
| CX1g000429 | 1:22,865,008-22,866,572 | - | C1H1g04340 | C2H1g10174 | LOC_Os01g44340 | Os01g0634600 | - | Detail |