| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H6g10299 | 6:25,414,185-25,417,298 | - | C1H6g08886 | - | - | Os06g0691700 | - | Detail |
| C2H6g11629 | 6:25,433,343-25,436,567 | - | C1H6g17791 | CX6g044342 | LOC_Os06g47720 | Os06g0692300 | - | Detail |
| C2H6g00127 | 6:25,449,251-25,452,445 | - | C1H6g17658 | CX6g045298 | LOC_Os06g47740 | Os06g0692500 | - | Detail |
| C2H6g21005 | 6:25,458,977-25,462,189 | - | C1H6g26107 | CX6g045710 | LOC_Os06g47750 | Os06g0692600 | - | Detail |
| C2H6g01994 | 6:25,468,080-25,471,836 | - | C1H6g21692 | CX6g045710 | LOC_Os06g47760 | Os06g0691800 | OsLRR-RLK1 | Detail |
| C2H6g11363 | 6:25,476,152-25,482,028 | - | C1H6g23509 | CX6g043156 | LOC_Os06g47770 | Os06g0692800 | - | Detail |
| C2H6g03719 | 6:25,484,339-25,487,932 | + | C1H6g01158 | CX6g042739 | LOC_Os06g47530 | Os06g0693000 | ArPK | Detail |
| C2H6g23724 | 6:25,490,330-25,493,956 | - | C1H6g13718 | CX6g041720 | LOC_Os06g47800 | Os06g0693100 | - | Detail |
| C2H6g13328 | 6:25,500,157-25,504,087 | - | C1H6g13718 | CX6g043578 | LOC_Os06g47800 | Os06g0693100 | - | Detail |
| C2H6g14063 | 6:25,515,138-25,517,612 | - | C1H6g13718 | CX6g043578 | LOC_Os06g47800 | Os06g0693100 | - | Detail |
| C2H6g15360 | 6:25,529,486-25,532,167 | - | C1H6g13718 | CX6g043159 | LOC_Os06g47800 | Os06g0693100 | - | Detail |
| C2H6g06687 | 6:25,533,638-25,535,560 | - | - | CX6g045926 | - | - | - | Detail |
| C2H6g28439 | 6:25,541,349-25,543,897 | - | C1H6g13718 | CX6g043805 | LOC_Os06g47800 | Os06g0693100 | - | Detail |
| C2H6g09200 | 6:25,554,571-25,556,639 | + | C1H6g20036 | CX6g041521 | LOC_Os06g47820 | Os06g0693200 | - | Detail |
| C2H6g02464 | 6:25,560,193-25,563,793 | - | C1H6g16940 | CX6g042559 | LOC_Os06g47830 | Os06g0693300 | RPA2C, RPA2c, OsRPA2c | Detail |
| C2H6g28302 | 6:25,565,065-25,567,978 | + | C1H6g11943 | CX6g042828 | LOC_Os06g47834 | Os06g0693400 | - | Detail |
| C2H6g00712 | 6:25,569,301-25,572,560 | + | C1H6g15537 | CX6g042429 | LOC_Os06g47840 | Os06g0693500 | - | Detail |
| C2H6g19868 | 6:25,573,701-25,574,530 | + | C1H6g00560 | CX6g042429 | LOC_Os06g47850 | Os06g0693600 | - | Detail |
| C2H6g08668 | 6:25,578,141-25,579,713 | + | C1H6g15597 | CX6g042821 | LOC_Os06g47860 | Os06g0693700 | - | Detail |
| C2H6g26521 | 6:25,585,187-25,590,244 | - | C1H6g09066 | CX6g042660 | LOC_Os06g47890 | Os06g0694000 | OsZTL2 | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002259 | 1:22,666,064-22,666,240 | - | - | - | - | Os09g0414600 | - | Detail |
| CX1g005176 | 1:22,667,269-22,668,669 | + | - | - | LOC_Os01g43940 | Os01g0630200 | - | Detail |
| CX1g000988 | 1:22,672,374-22,672,856 | - | - | - | LOC_Os01g43950 | Os01g0630300 | - | Detail |
| CX1g005159 | 1:22,675,088-22,675,345 | - | - | - | - | - | - | Detail |
| CX1g005258 | 1:22,686,355-22,692,747 | + | C1H1g00799 | C2H1g22336 | LOC_Os01g44040 | Os01g0631100 | - | Detail |
| CX1g002535 | 1:22,694,102-22,696,768 | + | C1H1g26941 | C2H1g25630 | LOC_Os01g44050 | Os01g0631200 | - | Detail |
| CX1g003884 | 1:22,710,116-22,710,523 | - | - | - | - | Os03g0708250 | - | Detail |
| CX1g001624 | 1:22,715,118-22,721,374 | + | C1H1g05926 | C2H1g14517 | LOC_Os01g44069 | Os01g0631400 | - | Detail |
| CX1g000338 | 1:22,728,120-22,729,515 | + | C1H1g08811 | C2H1g24347 | LOC_Os01g44090 | Os01g0631500 | - | Detail |
| CX1g001009 | 1:22,750,806-22,754,179 | + | C1H1g07009 | C2H1g14152 | LOC_Os01g44110 | Os01g0631700 | - | Detail |
| CX1g005012 | 1:22,756,152-22,756,430 | + | - | - | LOC_Os01g44120 | Os01g0631800 | - | Detail |
| CX1g000935 | 1:22,758,917-22,764,310 | + | C1H1g05320 | C2H1g16370 | LOC_Os01g44130 | Os01g0631900 | - | Detail |
| CX1g005415 | 1:22,767,425-22,770,367 | - | C1H5g06864 | - | LOC_Os01g44140 | Os01g0632000 | - | Detail |
| CX1g000578 | 1:22,803,824-22,807,846 | + | C1H1g09519 | C2H1g23506 | LOC_Os01g44220 | Os01g0633100 | AGPL2, OsAGPL2, osagpl2, APL2, OsAPL2, AGPiso, sh2, Sh2 | Detail |
| CX1g004196 | 1:22,810,334-22,813,306 | + | C1H1g25629 | C2H1g25610 | LOC_Os01g44230 | Os01g0633200 | - | Detail |
| CX1g001984 | 1:22,815,148-22,817,588 | + | C1H1g17417 | C2H1g21259 | LOC_Os01g44250 | Os01g0633400 | - | Detail |
| CX1g005798 | 1:22,822,682-22,824,302 | + | C1H1g26792 | C2H1g13154 | LOC_Os01g44260 | Os01g0633500 | Rd, DFR | Detail |
| CX1g002472 | 1:22,828,351-22,835,274 | - | C1H1g26567 | C2H1g30459 | LOC_Os01g44310 | Os01g0634300 | - | Detail |
| CX1g002072 | 1:22,861,487-22,863,474 | - | C1H1g01839 | C2H1g20909 | LOC_Os01g44330 | Os01g0634500 | - | Detail |
| CX1g000429 | 1:22,865,008-22,866,572 | - | C1H1g04340 | C2H1g10174 | LOC_Os01g44340 | Os01g0634600 | - | Detail |