| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g12416 | 1:31,702,167-31,706,617 | - | C2H1g03973 | CX1g000146 | LOC_Os01g61760 | Os01g0834100 | - | Detail |
| C1H1g06212 | 1:31,710,480-31,721,299 | + | C2H1g25411 | CX1g002696 | LOC_Os01g61780 | Os01g0834200 | - | Detail |
| C1H1g30061 | 1:31,728,722-31,730,161 | - | C2H1g11057 | CX1g000392 | LOC_Os01g61810 | Os01g0834400 | HAP3A, OsHAP3A, OsNF-YB-2, NFYB2 | Detail |
| C1H1g07712 | 1:31,731,952-31,736,728 | - | C2H1g10042 | CX1g001710 | LOC_Os01g61814 | Os01g0834600 | - | Detail |
| C1H1g15578 | 1:31,739,248-31,743,641 | + | C2H1g11754 | CX1g001115 | LOC_Os01g61830 | Os01g0834700 | - | Detail |
| C1H1g28438 | 1:31,746,927-31,747,166 | - | C2H1g04024 | CX1g005583 | LOC_Os01g61840 | Os01g0834800 | - | Detail |
| C1H1g29053 | 1:31,755,807-31,765,030 | - | C2H1g07677 | CX1g004964 | LOC_Os01g61860 | Os01g0835000 | - | Detail |
| C1H1g14368 | 1:31,780,490-31,785,814 | + | C2H1g02343 | CX1g001158 | LOC_Os01g61880 | Os01g0835500 | - | Detail |
| C1H1g23056 | 1:31,796,546-31,797,747 | - | C2H1g27745 | CX1g000977 | LOC_Os01g61900 | Os01g0835700 | OsCCT01 | Detail |
| C1H1g04133 | 1:31,802,050-31,805,363 | - | C2H1g21602 | CX1g007240 | LOC_Os01g61910 | Os01g0835800 | - | Detail |
| C1H1g21523 | 1:31,809,401-31,809,712 | + | C2H5g09767 | CX5g040997 | LOC_Os01g61920 | Os01g0835900 | - | Detail |
| C1H1g12123 | 1:31,814,530-31,824,148 | + | C2H1g29300 | CX1g000993 | LOC_Os01g61930 | Os05g0462600 | - | Detail |
| C1H1g13267 | 1:31,831,536-31,833,788 | + | C2H1g27556 | CX1g006810 | LOC_Os01g61940 | Os01g0836600 | OsABCG3 | Detail |
| C1H1g04982 | 1:31,839,610-31,840,164 | - | C2H1g15144 | - | LOC_Os01g61950 | - | - | Detail |
| C1H1g15863 | 1:31,841,733-31,842,944 | - | C2H1g29885 | CX1g001966 | LOC_Os01g61960 | Os01g0836700 | - | Detail |
| C1H1g03833 | 1:31,844,908-31,846,257 | - | C2H1g29885 | CX1g004021 | LOC_Os01g61970 | Os01g0836800 | - | Detail |
| C1H1g17938 | 1:31,849,282-31,849,788 | + | - | - | - | - | - | Detail |
| C1H1g23659 | 1:31,855,439-31,856,533 | + | - | CX1g000026 | LOC_Os01g61980 | Os01g0836900 | - | Detail |
| C1H1g22081 | 1:31,859,405-31,862,509 | - | C2H1g06537 | CX1g004745 | LOC_Os01g61990 | Os01g0837000 | - | Detail |
| C1H1g08351 | 1:31,864,744-31,866,551 | + | C2H1g25983 | CX1g000248 | LOC_Os01g62000 | Os01g0837100 | OsPLL2 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX5g036999 | 5:15,541,193-15,541,795 | - | C1H5g12122 | - | LOC_Os05g31785 | Os05g0383200 | - | Detail |
| CX5g036890 | 5:15,582,316-15,584,304 | - | C1H5g19817 | C2H5g16202 | LOC_Os05g31910 | Os05g0384600 | - | Detail |
| CX5g039660 | 5:15,589,926-15,597,824 | - | C1H5g14350 | C2H5g16221 | LOC_Os05g31920 | Os05g0384800 | - | Detail |
| CX5g039169 | 5:15,620,378-15,620,902 | + | C1H5g19708 | - | LOC_Os05g31970 | Os05g0385400 | - | Detail |
| CX5g037630 | 5:15,635,425-15,639,229 | + | C1H5g04647 | C2H5g28340 | LOC_Os05g32060 | Os05g0386000 | - | Detail |
| CX5g038141 | 5:15,648,761-15,650,123 | - | C1H5g24020 | C2H5g02326 | LOC_Os05g32070 | Os05g0386201 | - | Detail |
| CX5g036789 | 5:15,652,408-15,652,692 | - | - | - | - | - | - | Detail |
| CX5g040667 | 5:15,666,922-15,667,527 | - | - | - | LOC_Os05g32090 | - | - | Detail |
| CX5g038936 | 5:15,668,411-15,672,636 | + | C1H5g12810 | C2H5g13761 | LOC_Os05g32100 | Os05g0386400 | - | Detail |
| CX5g040934 | 5:15,675,105-15,675,308 | - | - | - | - | - | - | Detail |
| CX5g036682 | 5:15,680,867-15,683,712 | - | C1H5g22229 | C2H5g24568 | LOC_Os05g32110 | Os05g0386800 | - | Detail |
| CX5g040992 | 5:15,689,622-15,692,086 | + | C1H5g03117 | C2H5g06485 | LOC_Os05g32120 | Os05g0386900 | - | Detail |
| CX5g038566 | 5:15,693,178-15,695,582 | + | C1H5g30528 | C2H5g23057 | LOC_Os05g32130 | - | - | Detail |
| CX5g040130 | 5:15,700,378-15,703,946 | + | C1H5g26112 | C2H5g24262 | LOC_Os05g32140 | Os05g0387200 | - | Detail |
| CX5g041158 | 5:15,717,898-15,718,074 | + | - | - | - | - | - | Detail |
| CX5g040937 | 5:15,720,795-15,722,324 | + | C1H5g23814 | C2H5g13797 | LOC_Os05g32170 | Os05g0387700 | - | Detail |
| CX5g039837 | 5:15,729,003-15,731,252 | - | C1H5g18069 | C2H5g16678 | LOC_Os05g32180 | Os05g0387800 | - | Detail |
| CX5g041134 | 5:15,736,371-15,739,247 | - | C1H5g07636 | C2H5g20954 | LOC_Os05g32190 | Os05g0387900 | - | Detail |
| CX5g037831 | 5:15,739,664-15,744,941 | - | C1H5g04295 | C2H5g04124 | - | Os05g0388151 | - | Detail |
| CX5g040647 | 5:15,745,520-15,753,535 | + | C1H5g01058 | C2H5g24913 | LOC_Os05g32210 | Os05g0388400 | - | Detail |